Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2–Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation

por Chen, Rui, Fulton, Kelly M., Tran, Anh, Duque, Diana, Kovalchik, Kevin, Caron, Etienne, Twine, Susan M., Li, Jianjun
Publicado 2023

RHybridFinder: An R package to process immunopeptidomic data for putative hybrid peptide discovery

por Saab, Frederic, Hamelin, David J., Ma, Qing, Kovalchik, Kevin A., Sirois, Isabelle, Faridi, Pouya, Li, Chen, Purcell, Anthony W., Kubiniok, Peter, Caron, Etienne
Publicado 2021

Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues

por Kubiniok, Peter, Marcu, Ana, Bichmann, Leon, Kuchenbecker, Leon, Schuster, Heiko, Hamelin, David J., Duquette, Jérôme D., Kovalchik, Kevin A., Wessling, Laura, Kohlbacher, Oliver, Rammensee, Hans-Georg, Neidert, Marian C., Sirois, Isabelle, Caron, Etienne
Publicado 2022

The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner

por Hamelin, David J., Fournelle, Dominique, Grenier, Jean-Christophe, Schockaert, Jana, Kovalchik, Kevin A., Kubiniok, Peter, Mostefai, Fatima, Duquette, Jérôme D., Saab, Frederic, Sirois, Isabelle, Smith, Martin A., Pattijn, Sofie, Soudeyns, Hugo, Decaluwe, Hélène, Hussin, Julie, Caron, Etienne
Publicado 2022

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets

por Kovalchik, Kevin A., Ma, Qing, Wessling, Laura, Saab, Frederic, D. Duquette, Jérôme, Kubiniok, Peter, Hamelin, David J., Faridi, Pouya, Li, Chen, Purcell, Anthony W., Jang, Anne, Paramithiotis, Eustache, Tognetti, Marco, Reiter, Lukas, Bruderer, Roland, Lanoix, Joël, Bonneil, Éric, Courcelles, Mathieu, Thibault, Pierre, Caron, Etienne, Sirois, Isabelle
Publicado 2021