BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing

por Khachatryan, Lusine, Kraakman, Margriet E. M., Bernards, Alexandra T., Laros, Jeroen F. J.
Publicado 2019

Panton-Valentine Leukocidin–Positive CC398 MRSA in Urban Clinical Settings, the Netherlands

por Gooskens, Jairo, Konstantinovski, Marja M., Kraakman, Margriet E.M., Kalpoe, Jayant S., van Burgel, Nathalie D., Claas, Eric C.J., Bosch, Thijs
Publicado 2023

Extended-Spectrum β-Lactamase–producing Enterobacteriaceae among Travelers from the Netherlands

por Paltansing, Sunita, Vlot, Jessica A., Kraakman, Margriet E.M., Mesman, Romy, Bruijning, Marguerite L., Bernards, Alexandra T., Visser, Leo G., Veldkamp, Karin Ellen
Publicado 2013

A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters

por Toorop, Myrthe M. A., Kraakman, Margriet E. M., Hoogendijk, Irene V., van Prehn, Joffrey, Claas, Eric C. J., Wessels, Els, Boers, Stefan A.
Publicado 2023

Hospital transmission of borderline oxacillin-resistant Staphylococcus aureus evaluated by whole-genome sequencing

por Konstantinovski, Maria M., Veldkamp, Karin Ellen, Lavrijsen, Adriana P. M., Bosch, Thijs, Kraakman, Margriet E. M., Nooij, Sam, Claas, Eric C. J., Gooskens, Jairo
Publicado 2021

Longitudinal Monitoring of DNA Viral Loads in Transplant Patients Using Quantitative Metagenomic Next-Generation Sequencing

por Carbo, Ellen C., Russcher, Anne, Kraakman, Margriet E. M., de Brouwer, Caroline S., Sidorov, Igor A., Feltkamp, Mariet C. W., Kroes, Aloys C. M., Claas, Eric C. J., de Vries, Jutte J. C.
Publicado 2022

A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2

por Carbo, Ellen C., Mourik, Kees, Boers, Stefan A., Munnink, Bas Oude, Nieuwenhuijse, David, Jonges, Marcel, Welkers, Matthijs R. A., Matamoros, Sebastien, van Harinxma thoe Slooten, Joost, Kraakman, Margriet E. M., Karelioti, Evita, van der Meer, David, Veldkamp, Karin Ellen, Kroes, Aloys C. M., Sidorov, Igor, de Vries, Jutte J. C.
Publicado 2023