A unified approach for quantifying and interpreting DNA shape readout by transcription factors

por Rube, H Tomas, Rastogi, Chaitanya, Kribelbauer, Judith F, Bussemaker, Harmen J
Publicado 2018

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

por Rao, Satyanarayan, Chiu, Tsu-Pei, Kribelbauer, Judith F., Mann, Richard S., Bussemaker, Harmen J., Rohs, Remo
Publicado 2018

SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site

por Zhang, Liyang, Martini, Gabriella D., Rube, H. Tomas, Kribelbauer, Judith F., Rastogi, Chaitanya, FitzPatrick, Vincent D., Houtman, Jon C., Bussemaker, Harmen J., Pufall, Miles A.
Publicado 2018

Accurate and sensitive quantification of protein-DNA binding affinity

por Rastogi, Chaitanya, Rube, H. Tomas, Kribelbauer, Judith F., Crocker, Justin, Loker, Ryan E., Martini, Gabriella D., Laptenko, Oleg, Freed-Pastor, William A., Prives, Carol, Stern, David L., Mann, Richard S., Bussemaker, Harmen J.
Publicado 2018

Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning

por Rube, H. Tomas, Rastogi, Chaitanya, Feng, Siqian, Kribelbauer, Judith F., Li, Allyson, Becerra, Basheer, Melo, Lucas A. N., Do, Bach Viet, Li, Xiaoting, Adam, Hammaad H., Shah, Neel H., Mann, Richard S., Bussemaker, Harmen J.
Publicado 2022

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

por Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart
Publicado 2022