FocalCall: An R Package for the Annotation of Focal Copy Number Aberrations

por Krijgsman, Oscar, Benner, Christian, Meijer, Gerrit A, van de Wiel, Mark A, Ylstra, Bauke
Publicado 2014

Comparison of the oncogenomic landscape of canine and feline hemangiosarcoma shows novel parallels with human angiosarcoma

por Wong, Kim, Ludwig, Latasha, Krijgsman, Oscar, Adams, David J., Wood, Geoffrey A., van der Weyden, Louise
Publicado 2021

Focal Chromosomal Copy Number Aberrations Identify CMTM8 and GPR177 as New Candidate Driver Genes in Osteosarcoma

por Both, Joeri, Krijgsman, Oscar, Bras, Johannes, Schaap, Gerard R., Baas, Frank, Ylstra, Bauke, Hulsebos, Theo J. M.
Publicado 2014

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

por van Wieringen, Wessel N, Unger, Kristian, Leday, Gwenaël GR, Krijgsman, Oscar, de Menezes, Renée X, Ylstra, Bauke, van de Wiel, Mark A
Publicado 2012

FGFR1 Oncogenic Activation Reveals an Alternative Cell of Origin of SCLC in Rb1/p53 Mice

por Ferone, Giustina, Song, Ji-Ying, Krijgsman, Oscar, van der Vliet, Jan, Cozijnsen, Miranda, Semenova, Ekaterina A., Adams, David J., Peeper, Daniel, Berns, Anton
Publicado 2020

Clonality analysis of pulmonary tumors by genome-wide copy number profiling

por Vincenten, Julien P. L., van Essen, Hendrik F., Lissenberg-Witte, Birgit I., Bulkmans, Nicole W. J., Krijgsman, Oscar, Sie, Daoud, Eijk, Paul P., Smit, Egbert F., Ylstra, Bauke, Thunnissen, Erik
Publicado 2019

Correction: Clonality analysis of pulmonary tumors by genome-wide copy number profiling

por Vincenten, Julien P. L., van Essen, Hendrik F., Lissenberg-Witte, Birgit I., Bulkmans, Nicole W. J., Krijgsman, Oscar, Sie, Daoud, Eijk, Paul P., Smit, Egbert F., Ylstra, Bauke, Thunnissen, Erik
Publicado 2019

miR-129-3p controls centrosome number in metastatic prostate cancer cells by repressing CP110

por Bijnsdorp, Irene V., Hodzic, Jasmina, Lagerweij, Tonny, Westerman, Bart, Krijgsman, Oscar, Broeke, Jurjen, Verweij, Frederik, Nilsson, R. Jonas A., Rozendaal, Lawrence, van Beusechem, Victor W., van Moorselaar, Jeroen A., Wurdinger, Thomas, Geldof, Albert A.
Publicado 2016

Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors

por Azimi, Alireza, Caramuta, Stefano, Seashore‐Ludlow, Brinton, Boström, Johan, Robinson, Jonathan L, Edfors, Fredrik, Tuominen, Rainer, Kemper, Kristel, Krijgsman, Oscar, Peeper, Daniel S, Nielsen, Jens, Hansson, Johan, Egyhazi Brage, Suzanne, Altun, Mikael, Uhlen, Mathias, Maddalo, Gianluca
Publicado 2018

CopywriteR: DNA copy number detection from off-target sequence data

por Kuilman, Thomas, Velds, Arno, Kemper, Kristel, Ranzani, Marco, Bombardelli, Lorenzo, Hoogstraat, Marlous, Nevedomskaya, Ekaterina, Xu, Guotai, de Ruiter, Julian, Lolkema, Martijn P, Ylstra, Bauke, Jonkers, Jos, Rottenberg, Sven, Wessels, Lodewyk F, Adams, David J, Peeper, Daniel S, Krijgsman, Oscar
Publicado 2015

Integrative epigenetic taxonomy of primary prostate cancer

por Stelloo, Suzan, Nevedomskaya, Ekaterina, Kim, Yongsoo, Schuurman, Karianne, Valle-Encinas, Eider, Lobo, João, Krijgsman, Oscar, Peeper, Daniel Simon, Chang, Seiwon Laura, Feng, Felix Yi-Chung, Wessels, Lodewyk Frederik Ary, Henrique, Rui, Jerónimo, Carmen, Bergman, Andries Marinus, Zwart, Wilbert
Publicado 2018

Intra- and inter-tumor heterogeneity in a vemurafenib-resistant melanoma patient and derived xenografts

por Kemper, Kristel, Krijgsman, Oscar, Cornelissen-Steijger, Paulien, Shahrabi, Aida, Weeber, Fleur, Song, Ji-Ying, Kuilman, Thomas, Vis, Daniel J, Wessels, Lodewyk F, Voest, Emile E, Schumacher, Ton NM, Blank, Christian U, Adams, David J, Haanen, John B, Peeper, Daniel S
Publicado 2015

Neoadjuvant tamoxifen synchronizes ERα binding and gene expression profiles related to outcome and proliferation

por Severson, Tesa M., Nevedomskaya, Ekaterina, Peeters, Justine, Kuilman, Thomas, Krijgsman, Oscar, van Rossum, Annelot, Droog, Marjolein, Kim, Yongsoo, Koornstra, Rutger, Beumer, Inès, Glas, Annuska M., Peeper, Daniel, Wesseling, Jelle, Simon, Iris M., Wessels, Lodewyk, Linn, Sabine C., Zwart, Wilbert
Publicado 2016

Combined deletion of Bap1, Nf2, and Cdkn2ab causes rapid onset of malignant mesothelioma in mice

por Badhai, Jitendra, Pandey, Gaurav Kumar, Song, Ji-Ying, Krijgsman, Oscar, Bhaskaran, Rajith, Chandrasekaran, Gayathri, Kwon, Min-chul, Bombardelli, Lorenzo, Monkhorst, Kim, Grasso, Cristoforo, Zevenhoven, John, van der Vliet, Jan, Cozijnsen, Miranda, Krimpenfort, Paul, Peeper, Daniel, van Lohuizen, Maarten, Berns, Anton
Publicado 2020

Genomic profiling of stage II and III colon cancers reveals APC mutations to be associated with survival in stage III colon cancer patients

por van den Broek, Evert, Krijgsman, Oscar, Sie, Daoud, Tijssen, Marianne, Mongera, Sandra, van de Wiel, Mark A., Th. Belt, Eric J., den Uil, Sjoerd H., Bril, Herman, Stockmann, Hein B.A.C., Ylstra, Bauke, Carvalho, Beatriz, Meijer, Gerrit A., Fijneman, Remond J.A.
Publicado 2016

High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer

por van den Broek, Evert, Dijkstra, Maurits J. J., Krijgsman, Oscar, Sie, Daoud, Haan, Josien C., Traets, Joleen J. H., van de Wiel, Mark A., Nagtegaal, Iris D., Punt, Cornelis J. A., Carvalho, Beatriz, Ylstra, Bauke, Abeln, Sanne, Meijer, Gerrit A., Fijneman, Remond J. A.
Publicado 2015

Immortalization capacity of HPV types is inversely related to chromosomal instability

por Schütze, Denise M., Krijgsman, Oscar, Snijders, Peter J.F., Ylstra, Bauke, Weischenfeldt, Joachim, Mardin, Balca R., Stütz, Adrian M., Korbel, Jan O., de Winter, Johan P., Meijer, Chris J.L.M., Quint, Wim G.V., Bosch, Leontien, Wilting, Saskia M., Steenbergen, Renske D.M.
Publicado 2016

XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data

por Kluin, Roelof J. C., Kemper, Kristel, Kuilman, Thomas, de Ruiter, Julian R., Iyer, Vivek, Forment, Josep V., Cornelissen-Steijger, Paulien, de Rink, Iris, ter Brugge, Petra, Song, Ji-Ying, Klarenbeek, Sjoerd, McDermott, Ultan, Jonkers, Jos, Velds, Arno, Adams, David J., Peeper, Daniel S., Krijgsman, Oscar
Publicado 2018

Absence of PD-L1 expression on tumor cells in the context of an activated immune infiltrate may indicate impaired IFNγ signaling in non-small cell lung cancer

por Theelen, Willemijn S. M. E., Kuilman, Thomas, Schulze, Katja, Zou, Wei, Krijgsman, Oscar, Peters, Dennis D. G. C., Cornelissen, Sten, Monkhorst, Kim, Sarma, Pranamee, Sumiyoshi, Teiko, Amler, Lukas C., Willems, Stefan M., Blaauwgeers, Johannes L. G., van Noesel, Carel J. M., Peeper, Daniel S., van den Heuvel, Michel M., Kowanetz, Marcin
Publicado 2019

Transcription Factor NFIB Is a Driver of Small Cell Lung Cancer Progression in Mice and Marks Metastatic Disease in Patients

por Semenova, Ekaterina A., Kwon, Min-chul, Monkhorst, Kim, Song, Ji-Ying, Bhaskaran, Rajith, Krijgsman, Oscar, Kuilman, Thomas, Peters, Dennis, Buikhuisen, Wieneke A., Smit, Egbert F., Pritchard, Colin, Cozijnsen, Miranda, van der Vliet, Jan, Zevenhoven, John, Lambooij, Jan-Paul, Proost, Natalie, van Montfort, Erwin, Velds, Arno, Huijbers, Ivo J., Berns, Anton
Publicado 2016