Correlating Traits of Gene Retention, Sequence Divergence, Duplicability and Essentiality in Vertebrates, Arthropods, and Fungi

por Waterhouse, Robert M., Zdobnov, Evgeny M., Kriventseva, Evgenia V.
Publicado 2010

OrthoDB: the hierarchical catalog of eukaryotic orthologs

por Kriventseva, Evgenia V., Rahman, Nazim, Espinosa, Octavio, Zdobnov, Evgeny M.
Publicado 2008

Quantification of ortholog losses in insects and vertebrates

por Wyder, Stefan, Kriventseva, Evgenia V, Schröder, Reinhard, Kadowaki, Tatsuhiko, Zdobnov, Evgeny M
Publicado 2007

miROrtho: computational survey of microRNA genes

por Gerlach, Daniel, Kriventseva, Evgenia V., Rahman, Nazim, Vejnar, Charles E., Zdobnov, Evgeny M.
Publicado 2009

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

por Waterhouse, Robert M., Zdobnov, Evgeny M., Tegenfeldt, Fredrik, Li, Jia, Kriventseva, Evgenia V.
Publicado 2011

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

por Waterhouse, Robert M., Tegenfeldt, Fredrik, Li, Jia, Zdobnov, Evgeny M., Kriventseva, Evgenia V.
Publicado 2013

OrthoDB in 2020: evolutionary and functional annotations of orthologs

por Zdobnov, Evgeny M, Kuznetsov, Dmitry, Tegenfeldt, Fredrik, Manni, Mosè, Berkeley, Matthew, Kriventseva, Evgenia V
Publicado 2020

OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity

por Kuznetsov, Dmitry, Tegenfeldt, Fredrik, Manni, Mosè, Seppey, Mathieu, Berkeley, Matthew, Kriventseva, Evgenia V, Zdobnov, Evgeny M
Publicado 2022

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs

por Kriventseva, Evgenia V, Kuznetsov, Dmitry, Tegenfeldt, Fredrik, Manni, Mosè, Dias, Renata, Simão, Felipe A, Zdobnov, Evgeny M
Publicado 2019

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

por Waterhouse, Robert M, Seppey, Mathieu, Simão, Felipe A, Manni, Mosè, Ioannidis, Panagiotis, Klioutchnikov, Guennadi, Kriventseva, Evgenia V, Zdobnov, Evgeny M
Publicado 2018

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

por Kriventseva, Evgenia V., Tegenfeldt, Fredrik, Petty, Tom J., Waterhouse, Robert M., Simão, Felipe A., Pozdnyakov, Igor A., Ioannidis, Panagiotis, Zdobnov, Evgeny M.
Publicado 2014

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

por Zdobnov, Evgeny M., Tegenfeldt, Fredrik, Kuznetsov, Dmitry, Waterhouse, Robert M., Simão, Felipe A., Ioannidis, Panagiotis, Seppey, Mathieu, Loetscher, Alexis, Kriventseva, Evgenia V.
Publicado 2017

The bovine lactation genome: insights into the evolution of mammalian milk

por Lemay, Danielle G, Lynn, David J, Martin, William F, Neville, Margaret C, Casey, Theresa M, Rincon, Gonzalo, Kriventseva, Evgenia V, Barris, Wesley C, Hinrichs, Angie S, Molenaar, Adrian J, Pollard, Katherine S, Maqbool, Nauman J, Singh, Kuljeet, Murney, Regan, Zdobnov, Evgeny M, Tellam, Ross L, Medrano, Juan F, German, J Bruce, Rijnkels, Monique
Publicado 2009

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

por Simola, Daniel F., Wissler, Lothar, Donahue, Greg, Waterhouse, Robert M., Helmkampf, Martin, Roux, Julien, Nygaard, Sanne, Glastad, Karl M., Hagen, Darren E., Viljakainen, Lumi, Reese, Justin T., Hunt, Brendan G., Graur, Dan, Elhaik, Eran, Kriventseva, Evgenia V., Wen, Jiayu, Parker, Brian J., Cash, Elizabeth, Privman, Eyal, Childers, Christopher P., Muñoz-Torres, Monica C., Boomsma, Jacobus J., Bornberg-Bauer, Erich, Currie, Cameron R., Elsik, Christine G., Suen, Garret, Goodisman, Michael A.D., Keller, Laurent, Liebig, Jürgen, Rawls, Alan, Reinberg, Danny, Smith, Chris D., Smith, Chris R., Tsutsui, Neil, Wurm, Yannick, Zdobnov, Evgeny M., Berger, Shelley L., Gadau, Jürgen
Publicado 2013

Toward community standards in the quest for orthologs

por Dessimoz, Christophe, Gabaldón, Toni, Roos, David S., Sonnhammer, Erik L. L., Herrero, Javier, Altenhoff, Adrian, Apweiler, Rolf, Ashburner, Michael, Blake, Judith, Boeckmann, Brigitte, Bridge, Alan, Bruford, Elspeth, Cherry, Mike, Conte, Matthieu, Dannie, Durand, Datta, Ruchira, Dessimoz, Christophe, Domelevo Entfellner, Jean-Baka, Ebersberger, Ingo, Gabaldón, Toni, Galperin, Michael, Herrero, Javier, Joseph, Jacob, Koestler, Tina, Kriventseva, Evgenia, Lecompte, Odile, Leunissen, Jack, Lewis, Suzanna, Linard, Benjamin, Livstone, Michael S., Lu, Hui-Chun, Martin, Maria, Mazumder, Raja, Messina, David, Miele, Vincent, Muffato, Matthieu, Perrière, Guy, Punta, Marco, Roos, David, Rouard, Mathieu, Schmitt, Thomas, Schreiber, Fabian, Silva, Alan, Sjölander, Kimmen, Škunca, Nives, Sonnhammer, Erik, Stanley, Eleanor, Szklarczyk, Radek, Thomas, Paul, Uchiyama, Ikuo, Van Bel, Michiel, Vandepoele, Klaas, Vilella, Albert J., Yates, Andrew, Zdobnov, Evgeny
Publicado 2012