The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15

por Ozden, Burcu, Kryshtafovych, Andriy, Karaca, Ezgi
Publicado 2023

Cryo‐EM targets in CASP14

por Cragnolini, Tristan, Kryshtafovych, Andriy, Topf, Maya
Publicado 2021

Assessment of contact predictions in CASP12: Co‐evolution and deep learning coming of age

por Schaarschmidt, Joerg, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Bonvin, Alexandre M.J.J.
Publicado 2017

Evaluation of model refinement in CASP13

por Read, Randy J., Sammito, Massimo D., Kryshtafovych, Andriy, Croll, Tristan I.
Publicado 2019

Evaluation of template‐based modeling in CASP13

por Croll, Tristan I., Sammito, Massimo D., Kryshtafovych, Andriy, Read, Randy J.
Publicado 2019

Critical assessment of methods of protein structure prediction—Round VII

por Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Rost, Burkhard, Hubbard, Tim, Tramontano, Anna
Publicado 2007

Distribution of evaluation scores for the models submitted to the second cryo-EM model challenge

por Kryshtafovych, Andriy, Monastyrskyy, Bohdan, Adams, Paul D., Lawson, Catherine L., Chiu, Wah
Publicado 2018

Using local gene expression similarities to discover regulatory binding site modules

por Wilczyński, Bartek, Hvidsten, Torgeir R, Kryshtafovych, Andriy, Tiuryn, Jerzy, Komorowski, Jan, Fidelis, Krzysztof
Publicado 2006

A Comprehensive Analysis of the Structure-Function Relationship in Proteins Based on Local Structure Similarity

por Hvidsten, Torgeir R., Lægreid, Astrid, Kryshtafovych, Andriy, Andersson, Gunnar, Fidelis, Krzysztof, Komorowski, Jan
Publicado 2009

New tools and expanded data analysis capabilities at the protein structure prediction center

por Kryshtafovych, Andriy, Prlic, Andreas, Dmytriv, Zinoviy, Daniluk, Pawel, Milostan, Maciej, Eyrich, Volker, Hubbard, Tim, Fidelis, Krzysztof
Publicado 2007

Petascale Homology Search for Structure Prediction

por Lee, Sewon, Kim, Gyuri, Karin, Eli Levy, Mirdita, Milot, Park, Sukhwan, Chikhi, Rayan, Babaian, Artem, Kryshtafovych, Andriy, Steinegger, Martin
Publicado 2023

Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment

por Kryshtafovych, Andriy, Moult, John, Billings, Wendy M., Della Corte, Dennis, Fidelis, Krzysztof, Kwon, Sohee, Olechnovič, Kliment, Seok, Chaok, Venclovas, Česlovas, Won, Jonghun
Publicado 2021

Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2

por Huang, Yuanpeng Janet, Zhang, Ning, Bersch, Beate, Fidelis, Krzysztof, Inouye, Masayori, Ishida, Yojiro, Kryshtafovych, Andriy, Kobayashi, Naohiro, Kuroda, Yutaka, Liu, Gaohua, LiWang, Andy, Swapna, G.V.T, Wu, Nan, Yamazaki, Toshio, Montelione, Gaetano T.
Publicado 2021

Some of the most interesting CASP11 targets through the eyes of their authors

por Kryshtafovych, Andriy, Moult, John, Baslé, Arnaud, Burgin, Alex, Craig, Timothy K., Edwards, Robert A., Fass, Deborah, Hartmann, Marcus D., Korycinski, Mateusz, Lewis, Richard J., Lorimer, Donald, Lupas, Andrei N., Newman, Janet, Peat, Thomas S., Piepenbrink, Kurt H., Prahlad, Janani, van Raaij, Mark J., Rohwer, Forest, Segall, Anca M., Seguritan, Victor, Sundberg, Eric J., Singh, Abhimanyu K., Wilson, Mark A., Schwede, Torsten
Publicado 2015

Target highlights in CASP13: Experimental target structures through the eyes of their authors

por Lepore, Rosalba, Kryshtafovych, Andriy, Alahuhta, Markus, Veraszto, Harshul A., Bomble, Yannick J., Bufton, Joshua C., Bullock, Alex N., Caba, Cody, Cao, Hongnan, Davies, Owen R., Desfosses, Ambroise, Dunne, Matthew, Fidelis, Krzysztof, Goulding, Celia W., Gurusaran, Manickam, Gutsche, Irina, Harding, Christopher J., Hartmann, Marcus D., Hayes, Christopher S., Joachimiak, Andrzej, Leiman, Petr G., Loppnau, Peter, Lovering, Andrew L., Lunin, Vladimir V., Michalska, Karolina, Mir‐Sanchis, Ignacio, Mitra, AK, Moult, John, Phillips Jr, George N., Pinkas, Daniel M., Rice, Phoebe A., Tong, Yufeng, Topf, Maya, Walton, Jonathan D., Schwede, Torsten
Publicado 2019

Target highlights in CASP14: Analysis of models by structure providers

por Alexander, Leila T., Lepore, Rosalba, Kryshtafovych, Andriy, Adamopoulos, Athanassios, Alahuhta, Markus, Arvin, Ann M., Bomble, Yannick J., Böttcher, Bettina, Breyton, Cécile, Chiarini, Valerio, Chinnam, Naga babu, Chiu, Wah, Fidelis, Krzysztof, Grinter, Rhys, Gupta, Gagan D., Hartmann, Marcus D., Hayes, Christopher S., Heidebrecht, Tatjana, Ilari, Andrea, Joachimiak, Andrzej, Kim, Youngchang, Linares, Romain, Lovering, Andrew L., Lunin, Vladimir V., Lupas, Andrei N., Makbul, Cihan, Michalska, Karolina, Moult, John, Mukherjee, Prasun K., Nutt, William (Sam), Oliver, Stefan L., Perrakis, Anastassis, Stols, Lucy, Tainer, John A., Topf, Maya, Tsutakawa, Susan E., Valdivia‐Delgado, Mauricio, Schwede, Torsten
Publicado 2021

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

por Lawson, Catherine L., Kryshtafovych, Andriy, Adams, Paul D., Afonine, Pavel V., Baker, Matthew L., Barad, Benjamin A., Bond, Paul, Burnley, Tom, Cao, Renzhi, Cheng, Jianlin, Chojnowski, Grzegorz, Cowtan, Kevin, Dill, Ken A., DiMaio, Frank, Farrell, Daniel P., Fraser, James S., Herzik, Mark A., Hoh, Soon Wen, Hou, Jie, Hung, Li-Wei, Igaev, Maxim, Joseph, Agnel P., Kihara, Daisuke, Kumar, Dilip, Mittal, Sumit, Monastyrskyy, Bohdan, Olek, Mateusz, Palmer, Colin M., Patwardhan, Ardan, Perez, Alberto, Pfab, Jonas, Pintilie, Grigore D., Richardson, Jane S., Rosenthal, Peter B., Sarkar, Daipayan, Schäfer, Luisa U., Schmid, Michael F., Schröder, Gunnar F., Shekhar, Mrinal, Si, Dong, Singharoy, Abishek, Terashi, Genki, Terwilliger, Thomas C., Vaiana, Andrea, Wang, Liguo, Wang, Zhe, Wankowicz, Stephanie A., Williams, Christopher J., Winn, Martyn, Wu, Tianqi, Yu, Xiaodi, Zhang, Kaiming, Berman, Helen M., Chiu, Wah
Publicado 2021

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado 2016