DolphinNext: a distributed data processing platform for high throughput genomics

por Yukselen, Onur, Turkyilmaz, Osman, Ozturk, Ahmet Rasit, Garber, Manuel, Kucukural, Alper
Publicado 2020

DEBrowser: interactive differential expression analysis and visualization tool for count data

por Kucukural, Alper, Yukselen, Onur, Ozata, Deniz M., Moore, Melissa J., Garber, Manuel
Publicado 2019

Reduced Neurog3 Gene Dosage Shifts Enteroendocrine Progenitor Towards Goblet Cell Lineage in the Mouse Intestine

por Li, Hui Joyce, Ray, Subir K., Kucukural, Alper, Gradwohl, Gerard, Leiter, Andrew B.
Publicado 2020

Generation and Analysis of Expressed Sequence Tags from Olea europaea L.

por Ozdemir Ozgenturk, Nehir, Oruç, Fatma, Sezerman, Ugur, Kuçukural, Alper, Vural Korkut, Senay, Toksoz, Feriha, Un, Cemal
Publicado 2010

GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases

por Zhu, Lihua Julie, Lawrence, Michael, Gupta, Ankit, Pagès, Hervé, Kucukural, Alper, Garber, Manuel, Wolfe, Scot A.
Publicado 2017

An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes

por Lawson, Nathan D, Li, Rui, Shin, Masahiro, Grosse, Ann, Yukselen, Onur, Stone, Oliver A, Kucukural, Alper, Zhu, Lihua
Publicado 2020

An atlas of cell types in the mouse epididymis and vas deferens

por Rinaldi, Vera D, Donnard, Elisa, Gellatly, Kyle, Rasmussen, Morten, Kucukural, Alper, Yukselen, Onur, Garber, Manuel, Sharma, Upasna, Rando, Oliver J
Publicado 2020

Type I IFN–Driven Immune Cell Dysregulation in Rat Autoimmune Diabetes

por Qaisar, Natasha, Arowosegbe, Adediwura, Derr, Alan G., Kucukural, Alper, Satish, Basanthi, Racicot, Riccardo, Guo, Zhiru, Trombly, Melanie I., Wang, Jennifer P.
Publicado 2021

CRISPR-SONIC: targeted somatic oncogene knock-in enables rapid in vivo cancer modeling

por Mou, Haiwei, Ozata, Deniz M., Smith, Jordan L., Sheel, Ankur, Kwan, Suet-Yan, Hough, Soren, Kucukural, Alper, Kennedy, Zachary, Cao, Yueying, Xue, Wen
Publicado 2019

Evolutionarily Conserved Pachytene piRNA Loci are Highly Divergent among Modern Humans

por Özata, Deniz M, Yu, Tianxiong, Mou, Haiwei, Gainetdinov, Ildar, Colpan, Cansu, Cecchini, Katharine, Kaymaz, Yasin, Wu, Pei-Hsuan, Fan, Kaili, Kucukural, Alper, Weng, Zhiping, Zamore, Phillip D.
Publicado 2019

Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes

por Sephton, Chantelle F., Cenik, Can, Kucukural, Alper, Dammer, Eric B., Cenik, Basar, Han, YuHong, Dewey, Colleen M., Roth, Frederick P., Herz, Joachim, Peng, Junmin, Moore, Melissa J., Yu, Gang
Publicado 2011

Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells

por Min, So Yun, Desai, Anand, Yang, Zinger, Sharma, Agastya, DeSouza, Tiffany, Genga, Ryan M. J., Kucukural, Alper, Lifshitz, Lawrence M., Nielsen, Søren, Scheele, Camilla, Maehr, René, Garber, Manuel, Corvera, Silvia
Publicado 2019

Recovery of viable endocrine‐specific cells and transcriptomes from human pancreatic islet‐engrafted mice

por Redick, Sambra D., Leehy, Linda, Rittenhouse, Ann R., Blodgett, David M., Derr, Alan G., Kucukural, Alper, Garber, Manuel G., Shultz, Leonard D., Greiner, Dale L., Wang, Jennifer P., Harlan, David M., Bortell, Rita, Jurczyk, Agata
Publicado 2019

Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets

por Blodgett, David M., Nowosielska, Anetta, Afik, Shaked, Pechhold, Susanne, Cura, Anthony J., Kennedy, Norman J., Kim, Soyoung, Kucukural, Alper, Davis, Roger J., Kent, Sally C., Greiner, Dale L., Garber, Manuel G., Harlan, David M., diIorio, Philip
Publicado 2015

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013–2016 Epidemic

por Diehl, William E., Lin, Aaron E., Grubaugh, Nathan D., Carvalho, Luiz Max, Kim, Kyusik, Kyawe, Pyae Phyo, McCauley, Sean M., Donnard, Elisa, Kucukural, Alper, McDonel, Patrick, Schaffner, Stephen F., Garber, Manuel, Rambaut, Andrew, Andersen, Kristian G., Sabeti, Pardis C., Luban, Jeremy
Publicado 2016

HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells

por Wang, Yetao, Lifshitz, Lawrence, Gellatly, Kyle, Vinton, Carol L., Busman-Sahay, Kathleen, McCauley, Sean, Vangala, Pranitha, Kim, Kyusik, Derr, Alan, Jaiswal, Smita, Kucukural, Alper, McDonel, Patrick, Hunt, Peter W., Greenough, Thomas, Houghton, JeanMarie, Somsouk, Ma, Estes, Jacob D., Brenchley, Jason M., Garber, Manuel, Deeks, Steven G., Luban, Jeremy
Publicado 2020