Clonally Expanded Virus-Specific CD8 T Cells Acquire Diverse Transcriptional Phenotypes During Acute, Chronic, and Latent Infections

por Kuhn, Raphael, Sandu, Ioana, Agrafiotis, Andreas, Hong, Kai-Lin, Shlesinger, Danielle, Neimeier, Daniel, Merkler, Doron, Oxenius, Annette, Reddy, Sai T., Yermanos, Alexander
Publicado 2022

Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes

por Han, Jiami, Masserey, Solène, Shlesinger, Danielle, Kuhn, Raphael, Papadopoulou, Chrysa, Agrafiotis, Andreas, Kreiner, Victor, Dizerens, Raphael, Hong, Kai-Lin, Weber, Cédric, Greiff, Victor, Oxenius, Annette, Reddy, Sai T, Yermanos, Alexander
Publicado 2022

Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes

por Yermanos, Alexander, Agrafiotis, Andreas, Kuhn, Raphael, Robbiani, Damiano, Yates, Josephine, Papadopoulou, Chrysa, Han, Jiami, Sandu, Ioana, Weber, Cédric, Bieberich, Florian, Vazquez-Lombardi, Rodrigo, Dounas, Andreas, Neumeier, Daniel, Oxenius, Annette, Reddy, Sai T
Publicado 2021

Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells

por Neumeier, Daniel, Yermanos, Alexander, Agrafiotis, Andreas, Csepregi, Lucia, Chowdhury, Tasnia, Ehling, Roy A., Kuhn, Raphael, Cotet, Tudor-Stefan, Brisset-Di Roberto, Raphaël, Di Tacchio, Mariangela, Antonialli, Renan, Starkie, Dale, Lightwood, Daniel J., Oxenius, Annette, Reddy, Sai T.
Publicado 2022

Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity

por Agrafiotis, Andreas, Neumeier, Daniel, Hong, Kai-Lin, Chowdhury, Tasnia, Ehling, Roy, Kuhn, Raphael, Sandu, Ioana, Kreiner, Victor, Cotet, Tudor-Stefan, Shlesinger, Danielle, Laslo, Daria, Anzböck, Stine, Starkie, Dale, Lightwood, Daniel J., Oxenius, Annette, Reddy, Sai T., Yermanos, Alexander
Publicado 2023

Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis

por Neumeier, Daniel, Pedrioli, Alessandro, Genovese, Alessandro, Sandu, Ioana, Ehling, Roy, Hong, Kai‐Lin, Papadopoulou, Chrysa, Agrafiotis, Andreas, Kuhn, Raphael, Shlesinger, Danielle, Robbiani, Damiano, Han, Jiami, Hauri, Laura, Csepregi, Lucia, Greiff, Victor, Merkler, Doron, Reddy, Sai T., Oxenius, Annette, Yermanos, Alexander
Publicado 2021

Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity

por Shlesinger, Danielle, Hong, Kai-Lin, Shammas, Ghazal, Page, Nicolas, Sandu, Ioana, Agrafiotis, Andreas, Kreiner, Victor, Fonta, Nicolas, Vincenti, Ilena, Wagner, Ingrid, Piccinno, Margot, Mariotte, Alexandre, Klimek, Bogna, Dizerens, Raphael, Manero-Carranza, Marcos, Kuhn, Raphael, Ehling, Roy, Frei, Lester, Khodaverdi, Keywan, Panetti, Camilla, Joller, Nicole, Oxenius, Annette, Merkler, Doron, Reddy, Sai T., Yermanos, Alexander
Publicado 2022

Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS

por Agrafiotis, Andreas, Dizerens, Raphael, Vincenti, Ilena, Wagner, Ingrid, Kuhn, Raphael, Shlesinger, Danielle, Manero-Carranza, Marcos, Cotet, Tudor-Stefan, Hong, Kai-Lin, Page, Nicolas, Fonta, Nicolas, Shammas, Ghazal, Mariotte, Alexandre, Piccinno, Margot, Kreutzfeldt, Mario, Gruntz, Benedikt, Ehling, Roy, Genovese, Alessandro, Pedrioli, Alessandro, Dounas, Andreas, Franzenburg, Sören, Tumani, Hayrettin, Kümpfel, Tania, Kavaka, Vladyslav, Gerdes, Lisa Ann, Dornmair, Klaus, Beltrán, Eduardo, Oxenius, Annette, Reddy, Sai T., Merkler, Doron, Yermanos, Alexander
Publicado 2023

ePlatypus: an ecosystem for computational analysis of immunogenomics data

por Cotet, Tudor-Stefan, Agrafiotis, Andreas, Kreiner, Victor, Kuhn, Raphael, Shlesinger, Danielle, Manero-Carranza, Marcos, Khodaverdi, Keywan, Kladis, Evgenios, Desideri Perea, Aurora, Maassen-Veeters, Dylan, Glänzer, Wiona, Massery, Solène, Guerci, Lorenzo, Hong, Kai-Lin, Han, Jiami, Stiklioraitis, Kostas, D’Arcy, Vittoria Martinolli, Dizerens, Raphael, Kilchenmann, Samuel, Stalder, Lucas, Nissen, Leon, Vogelsanger, Basil, Anzböck, Stine, Laslo, Daria, Bakker, Sophie, Kondorosy, Melinda, Venerito, Marco, Sanz García, Alejandro, Feller, Isabelle, Oxenius, Annette, Reddy, Sai T, Yermanos, Alexander
Publicado 2023