The UCSC genome browser and associated tools

por Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2013

The UCSC Proteome Browser

por Hsu, Fan, Pringle, Tom H., Kuhn, Robert M., Karolchik, Donna, Diekhans, Mark, Haussler, David, Kent, W. James
Publicado 2005

Variation resources at UC Santa Cruz

por Thomas, Daryl J., Trumbower, Heather, Kern, Andrew D., Rhead, Brooke L., Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2007

UCSC Data Integrator and Variant Annotation Integrator

por Hinrichs, Angie S., Raney, Brian J., Speir, Matthew L., Rhead, Brooke, Casper, Jonathan, Karolchik, Donna, Kuhn, Robert M., Rosenbloom, Kate R., Zweig, Ann S., Haussler, David, Kent, W. James
Publicado 2016

The UCSC cancer genomics browser: update 2011

por Sanborn, J. Zachary, Benz, Stephen C., Craft, Brian, Szeto, Christopher, Kober, Kord M., Meyer, Laurence, Vaske, Charles J., Goldman, Mary, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Kent, W. James, Stuart, Joshua M., Haussler, David, Zhu, Jingchun
Publicado 2011

The ENCODE Project at UC Santa Cruz

por Thomas, Daryl J., Rosenbloom, Kate R., Clawson, Hiram, Hinrichs, Angie S., Trumbower, Heather, Raney, Brian J., Karolchik, Donna, Barber, Galt P., Harte, Rachel A., Hillman-Jackson, Jennifer, Kuhn, Robert M., Rhead, Brooke L., Smith, Kayla E., Thakkapallayil, Archana, Zweig, Ann S., Haussler, David, Kent, W. James
Publicado 2007

ENCODE whole-genome data in the UCSC Genome Browser

por Rosenbloom, Kate R., Dreszer, Timothy R., Pheasant, Michael, Barber, Galt P., Meyer, Laurence R., Pohl, Andy, Raney, Brian J., Wang, Ting, Hinrichs, Angie S., Zweig, Ann S., Fujita, Pauline A., Learned, Katrina, Rhead, Brooke, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Haussler, David, Kent, W. James
Publicado 2010

The UCSC Genome Browser database: 2019 update

por Haeussler, Maximilian, Zweig, Ann S, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Gonzalez, Jairo Navarro, Gibson, David, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James
Publicado 2019

UCSC Genome Browser enters 20th year

por Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James
Publicado 2020

Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace

por Qu, Kun, Garamszegi, Sara, Wu, Felix, Thorvaldsdottir, Helga, Liefeld, Ted, Ocana, Marco, Borges-Rivera, Diego, Pochet, Nathalie, Robinson, James T., Demchak, Barry, Hull, Tim, Ben-Artzi, Gil, Blankenberg, Daniel, Barber, Galt P., Lee, Brian T., Kuhn, Robert M., Nekrutenko, Anton, Segal, Eran, Ideker, Trey, Reich, Michael, Regev, Aviv, Chang, Howard Y., Mesirov, Jill P.
Publicado 2016

GenArk: Towards a million UCSC genome browsers

por Clawson, Hiram, Lee, Brian T, Raney, Brian J, Barber, Galt P, Casper, Jonathan, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Nassar, Luis R, Perez, Gerardo, Wick, Brittney, Schmelter, Daniel, Speir, Matthew L, Armstrong, Joel, Zweig, Ann S, Kuhn, Robert M, Kirilenko, Bogdan M., Hiller, Michael, Haussler, David, Kent, W James, Haeussler, Maximilian
Publicado 2023

GenArk: towards a million UCSC genome browsers

por Clawson, Hiram, Lee, Brian T., Raney, Brian J., Barber, Galt P., Casper, Jonathan, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S., Lee, Christopher M., Nassar, Luis R., Perez, Gerardo, Wick, Brittney, Schmelter, Daniel, Speir, Matthew L., Armstrong, Joel, Zweig, Ann S., Kuhn, Robert M., Kirilenko, Bogdan M., Hiller, Michael, Haussler, David, Kent, W. James, Haeussler, Maximilian
Publicado 2023

ENCODE Data in the UCSC Genome Browser: year 5 update

por Rosenbloom, Kate R., Sloan, Cricket A., Malladi, Venkat S., Dreszer, Timothy R., Learned, Katrina, Kirkup, Vanessa M., Wong, Matthew C., Maddren, Morgan, Fang, Ruihua, Heitner, Steven G., Lee, Brian T., Barber, Galt P., Harte, Rachel A., Diekhans, Mark, Long, Jeffrey C., Wilder, Steven P., Zweig, Ann S., Karolchik, Donna, Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2013

The UCSC Genome Browser database: 2016 update

por Speir, Matthew L., Zweig, Ann S., Rosenbloom, Kate R., Raney, Brian J., Paten, Benedict, Nejad, Parisa, Lee, Brian T., Learned, Katrina, Karolchik, Donna, Hinrichs, Angie S., Heitner, Steve, Harte, Rachel A., Haeussler, Maximilian, Guruvadoo, Luvina, Fujita, Pauline A., Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado 2016

The UCSC Genome Browser database: update 2010

por Rhead, Brooke, Karolchik, Donna, Kuhn, Robert M., Hinrichs, Angie S., Zweig, Ann S., Fujita, Pauline A., Diekhans, Mark, Smith, Kayla E., Rosenbloom, Kate R., Raney, Brian J., Pohl, Andy, Pheasant, Michael, Meyer, Laurence R., Learned, Katrina, Hsu, Fan, Hillman-Jackson, Jennifer, Harte, Rachel A., Giardine, Belinda, Dreszer, Timothy R., Clawson, Hiram, Barber, Galt P., Haussler, David, Kent, W. James
Publicado 2010

ENCODE whole-genome data in the UCSC genome browser (2011 update)

por Raney, Brian J., Cline, Melissa S., Rosenbloom, Kate R., Dreszer, Timothy R., Learned, Katrina, Barber, Galt P., Meyer, Laurence R., Sloan, Cricket A., Malladi, Venkat S., Roskin, Krishna M., Suh, Bernard B., Hinrichs, Angie S., Clawson, Hiram, Zweig, Ann S., Kirkup, Vanessa, Fujita, Pauline A., Rhead, Brooke, Smith, Kayla E., Pohl, Andy, Kuhn, Robert M., Karolchik, Donna, Haussler, David, Kent, W. James
Publicado 2011

The UCSC Genome Browser database: 2018 update

por Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James
Publicado 2018

The UCSC Genome Browser database: 2014 update

por Karolchik, Donna, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Cline, Melissa S., Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A., Heitner, Steve, Hinrichs, Angie S., Learned, Katrina, Lee, Brian T., Li, Chin H., Raney, Brian J., Rhead, Brooke, Rosenbloom, Kate R., Sloan, Cricket A., Speir, Matthew L., Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado 2014

The UCSC Genome Browser database: 2017 update

por Tyner, Cath, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Eisenhart, Christopher, Fischer, Clayton M., Gibson, David, Gonzalez, Jairo Navarro, Guruvadoo, Luvina, Haeussler, Maximilian, Heitner, Steve, Hinrichs, Angie S., Karolchik, Donna, Lee, Brian T., Lee, Christopher M., Nejad, Parisa, Raney, Brian J., Rosenbloom, Kate R., Speir, Matthew L., Villarreal, Chris, Vivian, John, Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado 2017

The UCSC Genome Browser database: 2021 update

por Navarro Gonzalez, Jairo, Zweig, Ann S, Speir, Matthew L, Schmelter, Daniel, Rosenbloom, Kate R, Raney, Brian J, Powell, Conner C, Nassar, Luis R, Maulding, Nathan D, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Fyfe, Alastair C, Fernandes, Jason D, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Benet-Pagès, Anna, Barber, Galt P, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Publicado 2020