Community Detection in Large-Scale Bipartite Biological Networks

por Calderer, Genís, Kuijjer, Marieke L.
Publicado 2021

Editorial: Applications and Methods in Genomic Networks

por Fagny, Maud, Glass, Kimberly, Kuijjer, Marieke L.
Publicado 2022

rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

por Osorio, Daniel, Kuijjer, Marieke L, Cai, James J
Publicado 2021

lionessR: single sample network inference in R

por Kuijjer, Marieke L, Hsieh, Ping-Han, Quackenbush, John, Glass, Kimberly
Publicado 2019

PUMA: PANDA Using MicroRNA Associations

por Kuijjer, Marieke L, Fagny, Maud, Marin, Alessandro, Quackenbush, John, Glass, Kimberly
Publicado 2020

PyPanda: a Python package for gene regulatory network reconstruction

por van IJzendoorn, David G.P., Glass, Kimberly, Quackenbush, John, Kuijjer, Marieke L.
Publicado 2016

Heterogeneity in the gene regulatory landscape of leiomyosarcoma

por Belova, Tatiana, Biondi, Nicola, Hsieh, Ping-Han, Lutsik, Pavlo, Chudasama, Priya, Kuijjer, Marieke L
Publicado 2023

gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit

por Guebila, Marouen Ben, Morgan, Daniel C, Glass, Kimberly, Kuijjer, Marieke L, DeMeo, Dawn L, Quackenbush, John
Publicado 2022

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

por Lopes-Ramos, Camila M., Belova, Tatiana, Brunner, Tess H., Ben Guebila, Marouen, Osorio, Daniel, Quackenbush, John, Kuijjer, Marieke L.
Publicado 2021

Linking Immunity with Genomics in Sarcomas: Is Genomic Complexity an Immunogenic Trigger?

por van Oost, Siddh, Meijer, Debora M., Kuijjer, Marieke L., Bovée, Judith V. M. G., de Miranda, Noel F. C. C.
Publicado 2021

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

por van IJzendoorn, David G. P., Szuhai, Karoly, Briaire-de Bruijn, Inge H., Kostine, Marie, Kuijjer, Marieke L., Bovée, Judith V. M. G.
Publicado 2019

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

por Paulson, Joseph N., Chen, Cho-Yi, Lopes-Ramos, Camila M., Kuijjer, Marieke L., Platig, John, Sonawane, Abhijeet R., Fagny, Maud, Glass, Kimberly, Quackenbush, John
Publicado 2017

GRAND: a database of gene regulatory network models across human conditions

por Ben Guebila, Marouen, Lopes-Ramos, Camila M, Weighill, Deborah, Sonawane, Abhijeet Rajendra, Burkholz, Rebekka, Shamsaei, Behrouz, Platig, John, Glass, Kimberly, Kuijjer, Marieke L, Quackenbush, John
Publicado 2021

Kinome and mRNA expression profiling of high-grade osteosarcoma cell lines implies Akt signaling as possible target for therapy

por Kuijjer, Marieke L, van den Akker, Brendy EWM, Hilhorst, Riet, Mommersteeg, Monique, Buddingh, Emilie P, Serra, Massimo, Bürger, Horst, Hogendoorn, Pancras CW, Cleton-Jansen, Anne-Marie
Publicado 2014

Regulatory network changes between cell lines and their tissues of origin

por Lopes-Ramos, Camila M., Paulson, Joseph N., Chen, Cho-Yi, Kuijjer, Marieke L., Fagny, Maud, Platig, John, Sonawane, Abhijeet R., DeMeo, Dawn L., Quackenbush, John, Glass, Kimberly
Publicado 2017

Modulation of the Osteosarcoma Expression Phenotype by MicroRNAs

por Namløs, Heidi M., Meza-Zepeda, Leonardo A., Barøy, Tale, Østensen, Ingrid H. G., Kresse, Stine H., Kuijjer, Marieke L., Serra, Massimo, Bürger, Horst, Cleton-Jansen, Anne-Marie, Myklebost, Ola
Publicado 2012

Mesenchymal stromal cells of osteosarcoma patients do not show evidence of neoplastic changes during long-term culture

por Buddingh, Emilie P, Ruslan, S Eriaty N, Reijnders, Christianne M A, Szuhai, Karoly, Kuijjer, Marieke L, Roelofs, Helene, Hogendoorn, Pancras C W, Maarten Egeler, R, Cleton-Jansen, Anne-Marie, Lankester, Arjan C
Publicado 2015

mRNA expression profiles of primary high-grade central osteosarcoma are preserved in cell lines and xenografts

por Kuijjer, Marieke L, Namløs, Heidi M, Hauben, Esther I, Machado, Isidro, Kresse, Stine H, Serra, Massimo, Llombart-Bosch, Antonio, Hogendoorn, Pancras CW, Meza-Zepeda, Leonardo A, Myklebost, Ola, Cleton-Jansen, Anne-Marie
Publicado 2011

Expression of the immune regulation antigen CD70 in osteosarcoma

por Pahl, Jens HW, Santos, Susy J, Kuijjer, Marieke L, Boerman, Gerharda H, Sand, Laurens GL, Szuhai, Karoly, Cleton-Jansen, Annemarie, Egeler, R Maarten, Boveé, Judith VMG, Schilham, Marco W, Lankester, Arjan C
Publicado 2015

IR/IGF1R signaling as potential target for treatment of high-grade osteosarcoma

por Kuijjer, Marieke L, Peterse, Elisabeth FP, van den Akker, Brendy EWM, Briaire-de Bruijn, Inge H, Serra, Massimo, Meza-Zepeda, Leonardo A, Myklebost, Ola, Hassan, A Bassim, Hogendoorn, Pancras CW, Cleton-Jansen, Anne-Marie
Publicado 2013