Jaccard index based similarity measure to compare transcription factor binding site models

por Vorontsov, Ilya E, Kulakovskiy, Ivan V, Makeev, Vsevolod J
Publicado 2013

Positional weight matrices have sufficient prediction power for analysis of noncoding variants

por Boytsov, Alexandr, Abramov, Sergey, Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2022

Analysis of functional importance of binding sites in the Drosophila gap gene network model

por Kozlov, Konstantin, Gursky, Vitaly V, Kulakovskiy, Ivan V, Dymova, Arina, Samsonova, Maria
Publicado 2015

Brain-related genes are specifically enriched with long phase 1 introns

por Baulin, Eugene F., Kulakovskiy, Ivan V., Roytberg, Mikhail A., Astakhova, Tatiana V.
Publicado 2020

An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana

por Klepikova, Anna V., Kulakovskiy, Ivan V., Kasianov, Artem S., Logacheva, Maria D., Penin, Aleksey A.
Publicado 2019

Annotation of the local context of RNA secondary structure improves the classification and prediction of A-minors

por Shalybkova, Anna A., Mikhailova, Darya S., Kulakovskiy, Ivan V., Fakhranurova, Liliia I., Baulin, Eugene F.
Publicado 2021

VTC4 Polyphosphate Polymerase Knockout Increases Stress Resistance of Saccharomyces cerevisiae Cells

por Tomashevsky, Alexander, Kulakovskaya, Ekaterina, Trilisenko, Ludmila, Kulakovskiy, Ivan V., Kulakovskaya, Tatiana, Fedorov, Alexey, Eldarov, Mikhail
Publicado 2021

RNA-Seq data of ALKBH5 and FTO double knockout HEK293T human cells

por Smolin, Egor A., Buyan, Andrey I., Lyabin, Dmitry N., Kulakovskiy, Ivan V., Eliseeva, Irina A.
Publicado 2022

EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes

por Marakulina, Daria, Vorontsov, Ilya E, Kulakovskiy, Ivan V, Lennartsson, Andreas, Drabløs, Finn, Medvedeva, Yulia A
Publicado 2022

Human Tissues Exhibit Diverse Composition of Translation Machinery

por Anisimova, Aleksandra S., Kolyupanova, Natalia M., Makarova, Nadezhda E., Egorov, Artyom A., Kulakovskiy, Ivan V., Dmitriev, Sergey E.
Publicado 2023

svist4get: a simple visualization tool for genomic tracks from sequencing experiments

por Egorov, Artyom A., Sakharova, Ekaterina A., Anisimova, Aleksandra S., Dmitriev, Sergey E., Gladyshev, Vadim N., Kulakovskiy, Ivan V.
Publicado 2019

Alternative Forms of Y-Box Binding Protein 1 and YB-1 mRNA

por Lyabin, Dmitry N., Doronin, Alexander N., Eliseeva, Irina A., Guens, Gelena P., Kulakovskiy, Ivan V., Ovchinnikov, Lev P.
Publicado 2014

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

por Kulakovskiy, Ivan V., Medvedeva, Yulia A., Schaefer, Ulf, Kasianov, Artem S., Vorontsov, Ilya E., Bajic, Vladimir B., Makeev, Vsevolod J.
Publicado 2013

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal

por Papatsenko, Dmitri, Darr, Henia, Kulakovskiy, Ivan V., Waghray, Avinash, Makeev, Vsevolod J., MacArthur, Ben D., Lemischka, Ihor R.
Publicado 2015

The Reduced Level of Inorganic Polyphosphate Mobilizes Antioxidant and Manganese-Resistance Systems in Saccharomyces cerevisiae

por Trilisenko, Ludmila, Zvonarev, Anton, Valiakhmetov, Airat, Penin, Alexey A., Eliseeva, Irina A., Ostroumov, Vladimir, Kulakovskiy, Ivan V., Kulakovskaya, Tatiana
Publicado 2019

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data

por Levitsky, Victor G, Kulakovskiy, Ivan V, Ershov, Nikita I, Oshchepkov, Dmitry Yu, Makeev, Vsevolod J, Hodgman, T C, Merkulova, Tatyana I
Publicado 2014

Negative selection maintains transcription factor binding motifs in human cancer

por Vorontsov, Ilya E., Khimulya, Grigory, Lukianova, Elena N., Nikolaeva, Daria D., Eliseeva, Irina A., Kulakovskiy, Ivan V., Makeev, Vsevolod J.
Publicado 2016

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

por Vorontsov, Ilya E., Fedorova, Alla D., Yevshin, Ivan S., Sharipov, Ruslan N., Kolpakov, Fedor A., Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2018

GTRD: an integrated view of transcription regulation

por Kolmykov, Semyon, Yevshin, Ivan, Kulyashov, Mikhail, Sharipov, Ruslan, Kondrakhin, Yury, Makeev, Vsevolod J, Kulakovskiy, Ivan V, Kel, Alexander, Kolpakov, Fedor
Publicado 2020

LegNet: a best-in-class deep learning model for short DNA regulatory regions

por Penzar, Dmitry, Nogina, Daria, Noskova, Elizaveta, Zinkevich, Arsenii, Meshcheryakov, Georgy, Lando, Andrey, Rafi, Abdul Muntakim, de Boer, Carl, Kulakovskiy, Ivan V
Publicado 2023