Evaluating the effect of annotation size on measures of semantic similarity

por Kulmanov, Maxat, Hoehndorf, Robert
Publicado 2017

DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier

por Kulmanov, Maxat, Hoehndorf, Robert
Publicado 2020

DeepGOPlus: improved protein function prediction from sequence

por Kulmanov, Maxat, Hoehndorf, Robert
Publicado 2021

DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms

por Kulmanov, Maxat, Hoehndorf, Robert
Publicado 2022

DeepGOPlus: improved protein function prediction from sequence

por Kulmanov, Maxat, Hoehndorf, Robert
Publicado 2019

DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier

por Kulmanov, Maxat, Khan, Mohammed Asif, Hoehndorf, Robert
Publicado 2018

DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web

por Kulmanov, Maxat, Zhapa-Camacho, Fernando, Hoehndorf, Robert
Publicado 2021

mOWL: Python library for machine learning with biomedical ontologies

por Zhapa-Camacho, Fernando, Kulmanov, Maxat, Hoehndorf, Robert
Publicado 2022

Semantic similarity and machine learning with ontologies

por Kulmanov, Maxat, Smaili, Fatima Zohra, Gao, Xin, Hoehndorf, Robert
Publicado 2020

Ontology-based validation and identification of regulatory phenotypes

por Kulmanov, Maxat, Schofield, Paul N, Gkoutos, Georgios V, Hoehndorf, Robert
Publicado 2018

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

por Boudellioua, Imane, Kulmanov, Maxat, Schofield, Paul N., Gkoutos, Georgios V., Hoehndorf, Robert
Publicado 2018

DeepPVP: phenotype-based prioritization of causative variants using deep learning

por Boudellioua, Imane, Kulmanov, Maxat, Schofield, Paul N., Gkoutos, Georgios V., Hoehndorf, Robert
Publicado 2019

PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research

por Kafkas, Şenay, Abdelhakim, Marwa, Hashish, Yasmeen, Kulmanov, Maxat, Abdellatif, Marwa, Schofield, Paul N., Hoehndorf, Robert
Publicado 2019

Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2

por Alam, Intikhab, Kamau, Allan A., Kulmanov, Maxat, Jaremko, Łukasz, Arold, Stefan T., Pain, Arnab, Gojobori, Takashi, Duarte, Carlos M.
Publicado 2020

Semantic prioritization of novel causative genomic variants

por Boudellioua, Imane, Mahamad Razali, Rozaimi B., Kulmanov, Maxat, Hashish, Yasmeen, Bajic, Vladimir B., Goncalves-Serra, Eva, Schoenmakers, Nadia, Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, Robert
Publicado 2017

DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species

por Salhi, Adil, Negrão, Sónia, Essack, Magbubah, Morton, Mitchell J. L., Bougouffa, Salim, Razali, Rozaimi, Radovanovic, Aleksandar, Marchand, Benoit, Kulmanov, Maxat, Hoehndorf, Robert, Tester, Mark, Bajic, Vladimir B.
Publicado 2017

CAGI6 ID-Challenge: Assessment of phenotype and variant predictions in 415 children with Neurodevelopmental Disorders (NDDs)

por Aspromonte, Maria Cristina, Conte, Alessio Del, Zhu, Shaowen, Tan, Wuwei, Shen, Yang, Zhang, Yexian, Li, Qi, Wang, Maggie Haitian, Babbi, Giulia, Bovo, Samuele, Martelli, Pier Luigi, Casadio, Rita, Althagafi, Azza, Toonsi, Sumyyah, Kulmanov, Maxat, Hoehndorf, Robert, Katsonis, Panagiotis, Williams, Amanda, Lichtarge, Olivier, Xian, Su, Surento, Wesley, Pejaver, Vikas, Mooney, Sean D., Sunderam, Uma, Srinivasan, Rajgopal, Murgia, Alessandra, Piovesan, Damiano, Tosatto, Silvio C. E., Leonardi, Emanuela
Publicado 2023

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

por Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R., Lee, Alexandra J., Kacsoh, Balint Z., Crocker, Alex W., Lewis, Kimberley A., Georghiou, George, Nguyen, Huy N., Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S., Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L., Freddolino, Peter L., Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M., Gemovic, Branislava, Perovic, Vladimir R., Davidović, Radoslav S., Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad R.K., Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C., Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A., Antczak, Magdalena, Fabris, Fabio, Wass, Mark N., Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E., Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J., Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W., Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T., Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L., Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B., Reeb, Jonas, Ritchie, David W., Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico, Falda, Marco, Berselli, Michele, Tosatto, Silvio C.E., Carraro, Marco, Piovesan, Damiano, Ur Rehman, Hafeez, Mao, Qizhong, Zhang, Shanshan, Vucetic, Slobodan, Black, Gage S., Jo, Dane, Suh, Erica, Dayton, Jonathan B., Larsen, Dallas J., Omdahl, Ashton R., McGuffin, Liam J., Brackenridge, Danielle A., Babbitt, Patricia C., Yunes, Jeffrey M., Fontana, Paolo, Zhang, Feng, Zhu, Shanfeng, You, Ronghui, Zhang, Zihan, Dai, Suyang, Yao, Shuwei, Tian, Weidong, Cao, Renzhi, Chandler, Caleb, Amezola, Miguel, Johnson, Devon, Chang, Jia-Ming, Liao, Wen-Hung, Liu, Yi-Wei, Pascarelli, Stefano, Frank, Yotam, Hoehndorf, Robert, Kulmanov, Maxat, Boudellioua, Imane, Politano, Gianfranco, Di Carlo, Stefano, Benso, Alfredo, Hakala, Kai, Ginter, Filip, Mehryary, Farrokh, Kaewphan, Suwisa, Björne, Jari, Moen, Hans, Tolvanen, Martti E.E., Salakoski, Tapio, Kihara, Daisuke, Jain, Aashish, Šmuc, Tomislav, Altenhoff, Adrian, Ben-Hur, Asa, Rost, Burkhard, Brenner, Steven E., Orengo, Christine A., Jeffery, Constance J., Bosco, Giovanni, Hogan, Deborah A., Martin, Maria J., O’Donovan, Claire, Mooney, Sean D., Greene, Casey S., Radivojac, Predrag, Friedberg, Iddo
Publicado 2019