Mobilome-driven segregation of the resistome in biological wastewater treatment

por de Nies, Laura, Busi, Susheel Bhanu, Kunath, Benoit Josef, May, Patrick, Wilmes, Paul
Publicado 2022

Functional meta-omics provide critical insights into long- and short-read assemblies

por Galata, Valentina, Busi, Susheel Bhanu, Kunath, Benoît Josef, de Nies, Laura, Calusinska, Magdalena, Halder, Rashi, May, Patrick, Wilmes, Paul, Laczny, Cédric Christian
Publicado 2021

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus

por Kunath, Benoit J., Delogu, Francesco, Naas, Adrian E., Arntzen, Magnus Ø., Eijsink, Vincent G. H., Henrissat, Bernard, Hvidsten, Torgeir R., Pope, Phillip B.
Publicado 2018

Integrative meta-omics in Galaxy and beyond

por Schiml, Valerie C., Delogu, Francesco, Kumar, Praveen, Kunath, Benoit, Batut, Bérénice, Mehta, Subina, Johnson, James E., Grüning, Björn, Pope, Phillip B., Jagtap, Pratik D., Griffin, Timothy J., Arntzen, Magnus Ø.
Publicado 2023

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

por Mehta, Subina, Crane, Marie, Leith, Emma, Batut, Bérénice, Hiltemann, Saskia, Arntzen, Magnus Ø, Kunath, Benoit J., Pope, Phillip B., Delogu, Francesco, Sajulga, Ray, Kumar, Praveen, Johnson, James E., Griffin, Timothy J., Jagtap, Pratik D.
Publicado 2021

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

por Van Den Bossche, Tim, Arntzen, Magnus Ø., Becher, Dörte, Benndorf, Dirk, Eijsink, Vincent G. H., Henry, Céline, Jagtap, Pratik D., Jehmlich, Nico, Juste, Catherine, Kunath, Benoit J., Mesuere, Bart, Muth, Thilo, Pope, Phillip B., Seifert, Jana, Tanca, Alessandro, Uzzau, Sergio, Wilmes, Paul, Hettich, Robert L., Armengaud, Jean
Publicado 2021

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

por Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Publicado 2020

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado 2020

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

por Van Den Bossche, Tim, Kunath, Benoit J., Schallert, Kay, Schäpe, Stephanie S., Abraham, Paul E., Armengaud, Jean, Arntzen, Magnus Ø., Bassignani, Ariane, Benndorf, Dirk, Fuchs, Stephan, Giannone, Richard J., Griffin, Timothy J., Hagen, Live H., Halder, Rashi, Henry, Céline, Hettich, Robert L., Heyer, Robert, Jagtap, Pratik, Jehmlich, Nico, Jensen, Marlene, Juste, Catherine, Kleiner, Manuel, Langella, Olivier, Lehmann, Theresa, Leith, Emma, May, Patrick, Mesuere, Bart, Miotello, Guylaine, Peters, Samantha L., Pible, Olivier, Queiros, Pedro T., Reichl, Udo, Renard, Bernhard Y., Schiebenhoefer, Henning, Sczyrba, Alexander, Tanca, Alessandro, Trappe, Kathrin, Trezzi, Jean-Pierre, Uzzau, Sergio, Verschaffelt, Pieter, von Bergen, Martin, Wilmes, Paul, Wolf, Maximilian, Martens, Lennart, Muth, Thilo
Publicado 2021