Prediction of protein-ligand interactions from paired protein sequence motifs and ligand substructures

por Greenside, Peyton, Hillenmeyer, Maureen, Kundaje, Anshul
Publicado 2018

GkmExplain: fast and accurate interpretation of nonlinear gapped k-mer SVMs

por Shrikumar, Avanti, Prakash, Eva, Kundaje, Anshul
Publicado 2019

Characterization of the direct targets of FOXO transcription factors throughout evolution

por Webb, Ashley E., Kundaje, Anshul, Brunet, Anne
Publicado 2016

Denoising genome-wide histone ChIP-seq with convolutional neural networks

por Koh, Pang Wei, Pierson, Emma, Kundaje, Anshul
Publicado 2017

Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

por Greenside, Peyton, Shimko, Tyler, Fordyce, Polly, Kundaje, Anshul
Publicado 2018

mtDNA Chromatin-like Organization Is Gradually Established during Mammalian Embryogenesis

por Marom, Shani, Blumberg, Amit, Kundaje, Anshul, Mishmar, Dan
Publicado 2019

The ENCODE Blacklist: Identification of Problematic Regions of the Genome

por Amemiya, Haley M., Kundaje, Anshul, Boyle, Alan P.
Publicado 2019

Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts

por Nair, Surag, Kim, Daniel S, Perricone, Jacob, Kundaje, Anshul
Publicado 2019

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

por Blumberg, Amit, Danko, Charles G., Kundaje, Anshul, Mishmar, Dan
Publicado 2018

Umap and Bismap: quantifying genome and methylome mappability

por Karimzadeh, Mehran, Ernst, Carl, Kundaje, Anshul, Hoffman, Michael M
Publicado 2018

MTSplice predicts effects of genetic variants on tissue-specific splicing

por Cheng, Jun, Çelik, Muhammed Hasan, Kundaje, Anshul, Gagneur, Julien
Publicado 2021

Publisher Correction: MTSplice predicts effects of genetic variants on tissue-specific splicing

por Cheng, Jun, Çelik, Muhammed Hasan, Kundaje, Anshul, Gagneur, Julien
Publicado 2021

Deciphering the impact of genetic variation on human polyadenylation using APARENT2

por Linder, Johannes, Koplik, Samantha E., Kundaje, Anshul, Seelig, Georg
Publicado 2022

The landscape of the histone-organized chromatin of Bdellovibrionota bacteria

por Marinov, Georgi K., Doughty, Benjamin, Kundaje, Anshul, Greenleaf, William J.
Publicado 2023

Large-Scale Quality Analysis of Published ChIP-seq Data

por Marinov, Georgi K., Kundaje, Anshul, Park, Peter J., Wold, Barbara J.
Publicado 2013

Linking disease associations with regulatory information in the human genome

por Schaub, Marc A., Boyle, Alan P., Kundaje, Anshul, Batzoglou, Serafim, Snyder, Michael
Publicado 2012

STAT3 Targets Suggest Mechanisms of Aggressive Tumorigenesis in Diffuse Large B-Cell Lymphoma

por Hardee, Jennifer, Ouyang, Zhengqing, Zhang, Yuping, Kundaje, Anshul, Lacroute, Philippe, Snyder, Michael
Publicado 2013

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

por Blumberg, Amit, Rice, Edward J., Kundaje, Anshul, Danko, Charles G., Mishmar, Dan
Publicado 2017

Vicus: Exploiting local structures to improve network-based analysis of biological data

por Wang, Bo, Huang, Lin, Zhu, Yuke, Kundaje, Anshul, Batzoglou, Serafim, Goldenberg, Anna
Publicado 2017

Brief Report: Cell Cycle Dynamics of Human Pluripotent Stem Cells Primed for Differentiation

por Shcherbina, Anna, Li, Jingling, Narayanan, Cyndhavi, Greenleaf, William, Kundaje, Anshul, Chetty, Sundari
Publicado 2019