Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment–Troponin C System

por Wabik, Jacek, Kurcinski, Mateusz, Kolinski, Andrzej, Ragno, Rino
Publicado 2015

Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations

por Kurcinski, Mateusz, Kmiecik, Sebastian, Zalewski, Mateusz, Kolinski, Andrzej
Publicado 2021

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site

por Kurcinski, Mateusz, Jamroz, Michal, Blaszczyk, Maciej, Kolinski, Andrzej, Kmiecik, Sebastian
Publicado 2015

Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif

por Ciemny, Maciej Pawel, Kurcinski, Mateusz, Blaszczyk, Maciej, Kolinski, Andrzej, Kmiecik, Sebastian
Publicado 2017

A protocol for CABS-dock protein–peptide docking driven by side-chain contact information

por Kurcinski, Mateusz, Blaszczyk, Maciej, Ciemny, Maciej Pawel, Kolinski, Andrzej, Kmiecik, Sebastian
Publicado 2017

Protein–peptide docking using CABS-dock and contact information

por Blaszczyk, Maciej, Ciemny, Maciej Pawel, Kolinski, Andrzej, Kurcinski, Mateusz, Kmiecik, Sebastian
Publicado 2018

Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility

por Kuriata, Aleksander, Iglesias, Valentin, Pujols, Jordi, Kurcinski, Mateusz, Kmiecik, Sebastian, Ventura, Salvador
Publicado 2019

MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes

por Badaczewska-Dawid, Aleksandra E, Nithin, Chandran, Wroblewski, Karol, Kurcinski, Mateusz, Kmiecik, Sebastian
Publicado 2022

Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction

por Ciemny, Maciej Pawel, Debinski, Aleksander, Paczkowska, Marta, Kolinski, Andrzej, Kurcinski, Mateusz, Kmiecik, Sebastian
Publicado 2016

Structural Insights into σ(1) Receptor Interactions with Opioid Ligands by Molecular Dynamics Simulations

por Kurciński, Mateusz, Jarończyk, Małgorzata, Lipiński, Piotr F. J., Dobrowolski, Jan Cz., Sadlej, Joanna
Publicado 2018

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility

por Kurcinski, Mateusz, Oleniecki, Tymoteusz, Ciemny, Maciej Pawel, Kuriata, Aleksander, Kolinski, Andrzej, Kmiecik, Sebastian
Publicado 2019

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures

por Kuriata, Aleksander, Gierut, Aleksandra Maria, Oleniecki, Tymoteusz, Ciemny, Maciej Paweł, Kolinski, Andrzej, Kurcinski, Mateusz, Kmiecik, Sebastian
Publicado 2018

CABS-dock standalone: a toolbox for flexible protein–peptide docking

por Kurcinski, Mateusz, Pawel Ciemny, Maciej, Oleniecki, Tymoteusz, Kuriata, Aleksander, Badaczewska-Dawid, Aleksandra E, Kolinski, Andrzej, Kmiecik, Sebastian
Publicado 2019