Readjoiner: a fast and memory efficient string graph-based sequence assembler

por Gonnella, Giorgio, Kurtz, Stefan
Publicado 2012

RGFA: powerful and convenient handling of assembly graphs

por Gonnella, Giorgio, Kurtz, Stefan
Publicado 2016

DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention

por Hausmann, Fabian, Kurtz, Stefan
Publicado 2021

Comparative genomics of Arabidopsis and maize: prospects and limitations

por Brendel, Volker, Kurtz, Stefan, Walbot, Virginia
Publicado 2002

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

por Ellinghaus, David, Kurtz, Stefan, Willhoeft, Ute
Publicado 2008

Efficient computation of absent words in genomic sequences

por Herold, Julia, Kurtz, Stefan, Giegerich, Robert
Publicado 2008

LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons

por Steinbiss, Sascha, Kastens, Sascha, Kurtz, Stefan
Publicado 2012

Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns

por Meyer, Fernando, Kurtz, Stefan, Beckstette, Michael
Publicado 2013

FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research

por Mader, Malte, Simon, Ronald, Kurtz, Stefan
Publicado 2014

CoCoNUT: an efficient system for the comparison and analysis of genomes

por Abouelhoda, Mohamed I, Kurtz, Stefan, Ohlebusch, Enno
Publicado 2008

Fast index based algorithms and software for matching position specific scoring matrices

por Beckstette, Michael, Homann, Robert, Giegerich, Robert, Kurtz, Stefan
Publicado 2006

Significant speedup of database searches with HMMs by search space reduction with PSSM family models

por Beckstette, Michael, Homann, Robert, Giegerich, Robert, Kurtz, Stefan
Publicado 2009

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

por Steinbiss, Sascha, Willhoeft, Ute, Gremme, Gordon, Kurtz, Stefan
Publicado 2009

FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context

por Mader, Malte, Simon, Ronald, Steinbiss, Sascha, Kurtz, Stefan
Publicado 2011

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

por Kurtz, Stefan, Narechania, Apurva, Stein, Joshua C, Ware, Doreen
Publicado 2008

Structator: fast index-based search for RNA sequence-structure patterns

por Meyer, Fernando, Kurtz, Stefan, Backofen, Rolf, Will, Sebastian, Beckstette, Michael
Publicado 2011

Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8

por Farnbacher, Max, Jahns, Thomas, Willrodt, Dirk, Daniel, Rolf, Haas, Rainer, Goesmann, Alexander, Kurtz, Stefan, Rieder, Gabriele
Publicado 2010

Versatile and open software for comparing large genomes

por Kurtz, Stefan, Phillippy, Adam, Delcher, Arthur L, Smoot, Michael, Shumway, Martin, Antonescu, Corina, Salzberg, Steven L
Publicado 2004

Optimized design and assessment of whole genome tiling arrays

por Gräf, Stefan, Nielsen, Fiona G. G., Kurtz, Stefan, Huynen, Martijn A., Birney, Ewan, Stunnenberg, Henk, Flicek, Paul
Publicado 2007

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

por Hoffmann, Steve, Otto, Christian, Kurtz, Stefan, Sharma, Cynthia M., Khaitovich, Philipp, Vogel, Jörg, Stadler, Peter F., Hackermüller, Jörg
Publicado 2009