DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics

por Midha, Mukul K., Campbell, David S., Kapil, Charu, Kusebauch, Ulrike, Hoopmann, Michael R., Bader, Samuel L., Moritz, Robert L.
Publicado 2020

A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS

por Midha, Mukul K., Kusebauch, Ulrike, Shteynberg, David, Kapil, Charu, Bader, Samuel L., Reddy, Panga Jaipal, Campbell, David S., Baliga, Nitin S., Moritz, Robert L.
Publicado 2020

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

por Diener, Christian, Hoge, Anna C. H., Kearney, Sean M., Kusebauch, Ulrike, Patwardhan, Sushmita, Moritz, Robert L., Erdman, Susan E., Gibbons, Sean M.
Publicado 2021

Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum

por López García de Lomana, Adrián, Kusebauch, Ulrike, Raman, Arjun V., Pan, Min, Turkarslan, Serdar, Lorenzetti, Alan P. R., Moritz, Robert L., Baliga, Nitin S.
Publicado 2020

Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity

por Herrmann, Marietta, Babler, Anne, Moshkova, Irina, Gremse, Felix, Kiessling, Fabian, Kusebauch, Ulrike, Nelea, Valentin, Kramann, Rafael, Moritz, Robert L., McKee, Marc D., Jahnen-Dechent, Willi
Publicado 2020

A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS

por Kusebauch, Ulrike, Lorenzetti, Alan P. R., Campbell, David S., Pan, Min, Shteynberg, David, Kapil, Charu, Midha, Mukul K., López García de Lomana, Adrián, Baliga, Nitin S., Moritz, Robert L.
Publicado 2023

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

por Brusniak, Mi-Youn K, Kwok, Sung-Tat, Christiansen, Mark, Campbell, David, Reiter, Lukas, Picotti, Paola, Kusebauch, Ulrike, Ramos, Hector, Deutsch, Eric W, Chen, Jingchun, Moritz, Robert L, Aebersold, Ruedi
Publicado 2011

Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocy...

por Surmann, Kristin, Michalik, Stephan, Hildebrandt, Petra, Gierok, Philipp, Depke, Maren, Brinkmann, Lars, Bernhardt, Jörg, Salazar, Manuela G., Sun, Zhi, Shteynberg, David, Kusebauch, Ulrike, Moritz, Robert L., Wollscheid, Bernd, Lalk, Michael, Völker, Uwe, Schmidt, Frank
Publicado 2014

The Microvesicle Component of HIV-1 Inocula Modulates Dendritic Cell Infection and Maturation and Enhances Adhesion to and Activation of T Lymphocytes

por Mercier, Sarah K., Donaghy, Heather, Botting, Rachel A., Turville, Stuart G., Harman, Andrew N., Nasr, Najla, Ji, Hong, Kusebauch, Ulrike, Mendoza, Luis, Shteynberg, David, Sandgren, Kerrie, Simpson, Richard J., Moritz, Robert L., Cunningham, Anthony L.
Publicado 2013

Correction: The Microvesicle Component of HIV-1 Inocula Modulates Dendritic Cell Infection and Maturation and Enhances Adhesion to and Activation of T Lymphocytes

por Mercier, Sarah K., Donaghy, Heather, Botting, Rachel A., Turville, Stuart G., Harman, Andrew N., Nasr, Najla, Ji, Hong, Kusebauch, Ulrike, Mendoza, Luis, Shteynberg, David, Sandgren, Kerrie, Simpson, Richard J., Moritz, Robert L., Cunningham, Anthony L.
Publicado 2013

Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector

por Kumar, Sudhir, Haile, Meseret T., Hoopmann, Michael R., Tran, Linh T., Michaels, Samantha A., Morrone, Seamus R., Ojo, Kayode K., Reynolds, Laura M., Kusebauch, Ulrike, Vaughan, Ashley M., Moritz, Robert L., Kappe, Stefan H. I., Swearingen, Kristian E.
Publicado 2021

A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon

por Lorenzetti, Alan P. R., Kusebauch, Ulrike, Zaramela, Lívia S., Wu, Wei-Ju, de Almeida, João P. P., Turkarslan, Serdar, L. G. de Lomana, Adrián, Gomes-Filho, José V., Vêncio, Ricardo Z. N., Moritz, Robert L., Koide, Tie, Baliga, Nitin S.
Publicado 2023

A wellness study of 108 individuals using personal, dense, dynamic data clouds

por Price, Nathan D., Magis, Andrew T., Earls, John C., Glusman, Gustavo, Levy, Roie, Lausted, Christopher, McDonald, Daniel T., Kusebauch, Ulrike, Moss, Christopher L., Zhou, Yong, Qin, Shizhen, Moritz, Robert L., Brogaard, Kristin, Omenn, Gilbert S., Lovejoy, Jennifer C., Hood, Leroy
Publicado 2017

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

por Maixner, Frank, Sarhan, Mohamed S., Huang, Kun D., Tett, Adrian, Schoenafinger, Alexander, Zingale, Stefania, Blanco-Míguez, Aitor, Manghi, Paolo, Cemper-Kiesslich, Jan, Rosendahl, Wilfried, Kusebauch, Ulrike, Morrone, Seamus R., Hoopmann, Michael R., Rota-Stabelli, Omar, Rattei, Thomas, Moritz, Robert L., Oeggl, Klaus, Segata, Nicola, Zink, Albert, Reschreiter, Hans, Kowarik, Kerstin
Publicado 2021

An activated form of ADAM10 is tumor selective and regulates cancer stem-like cells and tumor growth

por Atapattu, Lakmali, Saha, Nayanendu, Chheang, Chanly, Eissman, Moritz F., Xu, Kai, Vail, Mary E., Hii, Linda, Llerena, Carmen, Liu, Zhanqi, Horvay, Katja, Abud, Helen E., Kusebauch, Ulrike, Moritz, Robert L., Ding, Bi-Sen, Cao, Zhongwei, Rafii, Shahin, Ernst, Matthias, Scott, Andrew M., Nikolov, Dimitar B., Lackmann, Martin, Janes, Peter W.
Publicado 2016

A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions

por Michalik, Stephan, Depke, Maren, Murr, Annette, Gesell Salazar, Manuela, Kusebauch, Ulrike, Sun, Zhi, Meyer, Tanja C., Surmann, Kristin, Pförtner, Henrike, Hildebrandt, Petra, Weiss, Stefan, Palma Medina, Laura Marcela, Gutjahr, Melanie, Hammer, Elke, Becher, Dörte, Pribyl, Thomas, Hammerschmidt, Sven, Deutsch, Eric W., Bader, Samuel L., Hecker, Michael, Moritz, Robert L., Mäder, Ulrike, Völker, Uwe, Schmidt, Frank
Publicado 2017

Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers

por Watanabe, Kengo, Wilmanski, Tomasz, Baloni, Priyanka, Robinson, Max, Garcia, Gonzalo G., Hoopmann, Michael R., Midha, Mukul K., Baxter, David H., Maes, Michal, Morrone, Seamus R., Crebs, Kelly M., Kapil, Charu, Kusebauch, Ulrike, Wiedrick, Jack, Lapidus, Jodi, Pflieger, Lance, Lausted, Christopher, Roach, Jared C., Glusman, Gwênlyn, Cummings, Steven R., Schork, Nicholas J., Price, Nathan D., Hood, Leroy, Miller, Richard A., Moritz, Robert L., Rappaport, Noa
Publicado 2023

Author Correction: Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers

por Watanabe, Kengo, Wilmanski, Tomasz, Baloni, Priyanka, Robinson, Max, Garcia, Gonzalo G., Hoopmann, Michael R., Midha, Mukul K., Baxter, David H., Maes, Michal, Morrone, Seamus R., Crebs, Kelly M., Kapil, Charu, Kusebauch, Ulrike, Wiedrick, Jack, Lapidus, Jodi, Pflieger, Lance, Lausted, Christopher, Roach, Jared C., Glusman, Gwênlyn, Cummings, Steven R., Schork, Nicholas J., Price, Nathan D., Hood, Leroy, Miller, Richard A., Moritz, Robert L., Rappaport, Noa
Publicado 2023

The Iceman’s Last Meal Consisted of Fat, Wild Meat, and Cereals

por Maixner, Frank, Turaev, Dmitrij, Cazenave-Gassiot, Amaury, Janko, Marek, Krause-Kyora, Ben, Hoopmann, Michael R., Kusebauch, Ulrike, Sartain, Mark, Guerriero, Gea, O’Sullivan, Niall, Teasdale, Matthew, Cipollini, Giovanna, Paladin, Alice, Mattiangeli, Valeria, Samadelli, Marco, Tecchiati, Umberto, Putzer, Andreas, Palazoglu, Mine, Meissen, John, Lösch, Sandra, Rausch, Philipp, Baines, John F., Kim, Bum Jin, An, Hyun-Joo, Gostner, Paul, Egarter-Vigl, Eduard, Malfertheiner, Peter, Keller, Andreas, Stark, Robert W., Wenk, Markus, Bishop, David, Bradley, Daniel G., Fiehn, Oliver, Engstrand, Lars, Moritz, Robert L., Doble, Philip, Franke, Andre, Nebel, Almut, Oeggl, Klaus, Rattei, Thomas, Grimm, Rudolf, Zink, Albert
Publicado 2018

A high-stringency blueprint of the human proteome

por Adhikari, Subash, Nice, Edouard C., Deutsch, Eric W., Lane, Lydie, Omenn, Gilbert S., Pennington, Stephen R., Paik, Young-Ki, Overall, Christopher M., Corrales, Fernando J., Cristea, Ileana M., Van Eyk, Jennifer E., Uhlén, Mathias, Lindskog, Cecilia, Chan, Daniel W., Bairoch, Amos, Waddington, James C., Justice, Joshua L., LaBaer, Joshua, Rodriguez, Henry, He, Fuchu, Kostrzewa, Markus, Ping, Peipei, Gundry, Rebekah L., Stewart, Peter, Srivastava, Sanjeeva, Srivastava, Sudhir, Nogueira, Fabio C. S., Domont, Gilberto B., Vandenbrouck, Yves, Lam, Maggie P. Y., Wennersten, Sara, Vizcaino, Juan Antonio, Wilkins, Marc, Schwenk, Jochen M., Lundberg, Emma, Bandeira, Nuno, Marko-Varga, Gyorgy, Weintraub, Susan T., Pineau, Charles, Kusebauch, Ulrike, Moritz, Robert L., Ahn, Seong Beom, Palmblad, Magnus, Snyder, Michael P., Aebersold, Ruedi, Baker, Mark S.
Publicado 2020