Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y

por Kutnjak, Denis, Elena, Santiago F., Ravnikar, Maja
Publicado 2017

Virome Analysis of Signal Crayfish (Pacifastacus leniusculus) along Its Invasion Range Reveals Diverse and Divergent RNA Viruses

por Bačnik, Katarina, Kutnjak, Denis, Černi, Silvija, Bielen, Ana, Hudina, Sandra
Publicado 2021

Global Advances in Tomato Virome Research: Current Status and the Impact of High-Throughput Sequencing

por Rivarez, Mark Paul Selda, Vučurović, Ana, Mehle, Nataša, Ravnikar, Maja, Kutnjak, Denis
Publicado 2021

Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches

por Pecman, Anja, Kutnjak, Denis, Gutiérrez-Aguirre, Ion, Adams, Ian, Fox, Adrian, Boonham, Neil, Ravnikar, Maja
Publicado 2017

Systematic Comparison of Nanopore and Illumina Sequencing for the Detection of Plant Viruses and Viroids Using Total RNA Sequencing Approach

por Pecman, Anja, Adams, Ian, Gutiérrez-Aguirre, Ion, Fox, Adrian, Boonham, Neil, Ravnikar, Maja, Kutnjak, Denis
Publicado 2022

Transmission modes affect the population structure of potato virus Y in potato

por da Silva, Washington, Kutnjak, Denis, Xu, Yi, Xu, Yimin, Giovannoni, James, Elena, Santiago F., Gray, Stewart
Publicado 2020

Identification of novel reassortant mammalian orthoreoviruses from bats in Slovenia

por Naglič, Tina, Rihtarič, Danijela, Hostnik, Peter, Toplak, Nataša, Koren, Simon, Kuhar, Urška, Jamnikar-Ciglenečki, Urška, Kutnjak, Denis, Steyer, Andrej
Publicado 2018

High-Throughput Sequencing Facilitates Characterization of a “Forgotten” Plant Virus: The Case of a Henbane Mosaic Virus Infecting Tomato

por Pecman, Anja, Kutnjak, Denis, Mehle, Nataša, Žnidarič, Magda Tušek, Gutiérrez-Aguirre, Ion, Pirnat, Patricija, Adams, Ian, Boonham, Neil, Ravnikar, Maja
Publicado 2018

In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem

por Rivarez, Mark Paul Selda, Pecman, Anja, Bačnik, Katarina, Maksimović, Olivera, Vučurović, Ana, Seljak, Gabrijel, Mehle, Nataša, Gutiérrez-Aguirre, Ion, Ravnikar, Maja, Kutnjak, Denis
Publicado 2023

New Insights into the Evolutionary and Genomic Landscape of Molluscum Contagiosum Virus (MCV) based on Nine MCV1 and Six MCV2 Complete Genome Sequences

por Zorec, Tomaž M., Kutnjak, Denis, Hošnjak, Lea, Kušar, Blanka, Trčko, Katarina, Kocjan, Boštjan J., Li, Yu, Križmarić, Miljenko, Miljković, Jovan, Ravnikar, Maja, Poljak, Mario
Publicado 2018

Evaluation of Methods and Processes for Robust Monitoring of SARS-CoV-2 in Wastewater

por Maksimovic Carvalho Ferreira, Olivera, Lengar, Živa, Kogej, Zala, Bačnik, Katarina, Bajde, Irena, Milavec, Mojca, Županič, Anže, Mehle, Nataša, Kutnjak, Denis, Ravnikar, Maja, Gutierrez-Aguirre, Ion
Publicado 2022

Tomato brown rugose fruit virus in aqueous environments – survival and significance of water-mediated transmission

por Mehle, Nataša, Bačnik, Katarina, Bajde, Irena, Brodarič, Jakob, Fox, Adrian, Gutiérrez-Aguirre, Ion, Kitek, Miha, Kutnjak, Denis, Loh, Yue Lin, Maksimović Carvalho Ferreira, Olivera, Ravnikar, Maja, Vogel, Elise, Vos, Christine, Vučurović, Ana
Publicado 2023

Interlaboratory Comparison Study on Ribodepleted Total RNA High-Throughput Sequencing for Plant Virus Diagnostics and Bioinformatic Competence

por Gaafar, Yahya Z. A., Westenberg, Marcel, Botermans, Marleen, László, Krizbai, De Jonghe, Kris, Foucart, Yoika, Ferretti, Luca, Kutnjak, Denis, Pecman, Anja, Mehle, Nataša, Kreuze, Jan, Muller, Giovanna, Vakirlis, Nikolaos, Beris, Despoina, Varveri, Christina, Ziebell, Heiko
Publicado 2021

Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis

por Fontdevila Pareta, Nuria, Khalili, Maryam, Maachi, Ayoub, Rivarez, Mark Paul S., Rollin, Johan, Salavert, Ferran, Temple, Coline, Aranda, Miguel A., Boonham, Neil, Botermans, Marleen, Candresse, Thierry, Fox, Adrian, Hernando, Yolanda, Kutnjak, Denis, Marais, Armelle, Petter, Françoise, Ravnikar, Maja, Selmi, Ilhem, Tahzima, Rachid, Trontin, Charlotte, Wetzel, Thierry, Massart, Sebastien
Publicado 2023

A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses

por Kutnjak, Denis, Tamisier, Lucie, Adams, Ian, Boonham, Neil, Candresse, Thierry, Chiumenti, Michela, De Jonghe, Kris, Kreuze, Jan F., Lefebvre, Marie, Silva, Gonçalo, Malapi-Wight, Martha, Margaria, Paolo, Mavrič Pleško, Irena, McGreig, Sam, Miozzi, Laura, Remenant, Benoit, Reynard, Jean-Sebastien, Rollin, Johan, Rott, Mike, Schumpp, Olivier, Massart, Sébastien, Haegeman, Annelies
Publicado 2021

Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests

por Haegeman, Annelies, Foucart, Yoika, De Jonghe, Kris, Goedefroit, Thomas, Al Rwahnih, Maher, Boonham, Neil, Candresse, Thierry, Gaafar, Yahya Z. A., Hurtado-Gonzales, Oscar P., Kogej Zwitter, Zala, Kutnjak, Denis, Lamovšek, Janja, Lefebvre, Marie, Malapi, Martha, Mavrič Pleško, Irena, Önder, Serkan, Reynard, Jean-Sébastien, Salavert Pamblanco, Ferran, Schumpp, Olivier, Stevens, Kristian, Pal, Chandan, Tamisier, Lucie, Ulubaş Serçe, Çiğdem, van Duivenbode, Inge, Waite, David W., Hu, Xiaojun, Ziebell, Heiko, Massart, Sébastien
Publicado 2023