De novo Nanopore read quality improvement using deep learning

por LaPierre, Nathan, Egan, Rob, Wang, Wei, Wang, Zhong
Publicado 2019

Metalign: efficient alignment-based metagenomic profiling via containment min hash

por LaPierre, Nathan, Alser, Mohammed, Eskin, Eleazar, Koslicki, David, Mangul, Serghei
Publicado 2020

Leveraging family data to design Mendelian Randomization that is provably robust to population stratification

por LaPierre, Nathan, Fu, Boyang, Turnbull, Steven, Eskin, Eleazar, Sankararaman, Sriram
Publicado 2023

Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy

por Cinelli, Carlos, LaPierre, Nathan, Hill, Brian L., Sankararaman, Sriram, Eskin, Eleazar
Publicado 2022

Identifying causal variants by fine mapping across multiple studies

por LaPierre, Nathan, Taraszka, Kodi, Huang, Helen, He, Rosemary, Hormozdiari, Farhad, Eskin, Eleazar
Publicado 2021

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

por LaPierre, Nathan, Mangul, Serghei, Alser, Mohammed, Mandric, Igor, Wu, Nicholas C., Koslicki, David, Eskin, Eleazar
Publicado 2019

Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in a panel of inbred and recombinant inbred mice

por Khan, Arshad H., Bagley, Jared R., LaPierre, Nathan, Gonzalez-Figueroa, Carlos, Spencer, Tadeo C., Choudhury, Mudra, Xiao, Xinshu, Eskin, Eleazar, Jentsch, James D., Smith, Desmond J.
Publicado 2023

Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing

por Bloom, Joshua S., Sathe, Laila, Munugala, Chetan, Jones, Eric M., Gasperini, Molly, Lubock, Nathan B., Yarza, Fauna, Thompson, Erin M., Kovary, Kyle M., Park, Jimin, Marquette, Dawn, Kay, Stephania, Lucas, Mark, Love, TreQuan, Booeshaghi, A. Sina, Brandenberg, Oliver F., Guo, Longhua, Boocock, James, Hochman, Myles, Simpkins, Scott W., Lin, Isabella, LaPierre, Nathan, Hong, Duke, Zhang, Yi, Oland, Gabriel, Choe, Bianca Judy, Chandrasekaran, Sukantha, Hilt, Evann E., Butte, Manish J., Damoiseaux, Robert, Kravit, Clifford, Cooper, Aaron R., Yin, Yi, Pachter, Lior, Garner, Omai B., Flint, Jonathan, Eskin, Eleazar, Luo, Chongyuan, Kosuri, Sriram, Kruglyak, Leonid, Arboleda, Valerie A.
Publicado 2021

Critical Assessment of Metagenome Interpretation: the second round of challenges

por Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Publicado 2022