Sensitivity, specificity, and reproducibility of RNA-Seq differential expression calls

por Łabaj, Paweł P., Kreil, David P.
Publicado 2016

An analysis of single amino acid repeats as use case for application specific background models

por Łabaj, Paweł P, Sykacek, Peter, Kreil, David P
Publicado 2011

Editorial: Critical assessment of massive data analysis (CAMDA) annual conference 2021

por Łabaj, Paweł P., Dopazo, Joaquin, Xiao, Wenzhong, Kreil, David P.
Publicado 2023

Improving RNA-Seq Precision with MapAl

por Łabaj, Paweł P., Linggi, Bryan E., Wiley, H. Steven, Kreil, David P.
Publicado 2012

Altered cytokine levels and immune responses in patients with SARS-CoV-2 infection and related conditions

por Noroozi, Rezvan, Branicki, Wojciech, Pyrc, Krzysztof, Łabaj, Paweł P., Pospiech, Ewelina, Taheri, Mohammad, Ghafouri-Fard, Soudeh
Publicado 2020

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling

por Łabaj, Paweł P., Leparc, Germán G., Linggi, Bryan E., Markillie, Lye Meng, Wiley, H. Steven, Kreil, David P.
Publicado 2011

The SARS-CoV-2 ORF10 is not essential in vitro or in vivo in humans

por Pancer, Katarzyna, Milewska, Aleksandra, Owczarek, Katarzyna, Dabrowska, Agnieszka, Kowalski, Michał, Łabaj, Paweł P., Branicki, Wojciech, Sanak, Marek, Pyrc, Krzysztof
Publicado 2020

Mycoparasitism related targets of Tmk1 indicate stimulating regulatory functions of this MAP kinase in Trichoderma atroviride

por Atanasova, Lea, Marchetti-Deschmann, Martina, Nemes, Albert, Bruckner, Bianca, Rehulka, Pavel, Stralis-Pavese, Nancy, Łabaj, Paweł P., Kreil, David P., Zeilinger, Susanne
Publicado 2023

The Gpr1-regulated Sur7 family protein Sfp2 is required for hyphal growth and cell wall stability in the mycoparasite Trichoderma atroviride

por Atanasova, Lea, Gruber, Sabine, Lichius, Alexander, Radebner, Theresa, Abendstein, Leoni, Münsterkötter, Martin, Stralis-Pavese, Nancy, Łabaj, Paweł P., Kreil, David P., Zeilinger, Susanne
Publicado 2018

Effects of host genetic variations on response to, susceptibility and severity of respiratory infections

por Ghafouri-Fard, Soudeh, Noroozi, Rezvan, Vafaee, Reza, Branicki, Wojciech, Poṡpiech, Ewelina, Pyrc, Krzysztof, Łabaj, Paweł P, Omrani, Mir Davood, Taheri, Mohammad, Sanak, Marek
Publicado 2020

Angiotensin converting enzyme: A review on expression profile and its association with human disorders with special focus on SARS-CoV-2 infection

por Ghafouri-Fard, Soudeh, Noroozi, Rezvan, Omrani, Mir Davood, Branicki, Wojciech, Pośpiech, Ewelina, Sayad, Arezou, Pyrc, Krzysztof, Łabaj, Paweł P., Vafaee, Reza, Taheri, Mohammad, Sanak, Marek
Publicado 2020

Identification of Cellular Factors Required for SARS-CoV-2 Replication

por Synowiec, Aleksandra, Jedrysik, Malwina, Branicki, Wojciech, Klajmon, Adrianna, Lei, Jing, Owczarek, Katarzyna, Suo, Chen, Szczepanski, Artur, Wang, Jingru, Zhang, Pengyan, Labaj, Pawel P., Pyrc, Krzysztof
Publicado 2021

Detecting and correcting systematic variation in large-scale RNA sequencing data

por Li, Sheng, Łabaj, Paweł P., Zumbo, Paul, Sykacek, Peter, Shi, Wei, Shi, Leming, Phan, John, Wu, Leo, Wang, May, Wang, Charles, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Kreil, David P., Mason, Christopher E.
Publicado 2014

SARS-CoV-2 infection impairs NK cell functions via activation of the LLT1-CD161 axis

por Lenart, Marzena, Górecka, Magdalena, Bochenek, Michal, Barreto-Duran, Emilia, Szczepański, Artur, Gałuszka-Bulaga, Adrianna, Mazur-Panasiuk, Natalia, Węglarczyk, Kazimierz, Siwiec-Koźlik, Andżelika, Korkosz, Mariusz, Łabaj, Paweł P., Baj-Krzyworzeka, Monika, Siedlar, Maciej, Pyrc, Krzysztof
Publicado 2023

Experiences with workflows for automating data-intensive bioinformatics

por Spjuth, Ola, Bongcam-Rudloff, Erik, Hernández, Guillermo Carrasco, Forer, Lukas, Giovacchini, Mario, Guimera, Roman Valls, Kallio, Aleksi, Korpelainen, Eija, Kańduła, Maciej M, Krachunov, Milko, Kreil, David P, Kulev, Ognyan, Łabaj, Paweł P., Lampa, Samuel, Pireddu, Luca, Schönherr, Sebastian, Siretskiy, Alexey, Vassilev, Dimitar
Publicado 2015

A comprehensive rat transcriptome built from large scale RNA-seq-based annotation

por Ji, Xiangjun, Li, Peng, Fuscoe, James C, Chen, Geng, Xiao, Wenzhong, Shi, Leming, Ning, Baitang, Liu, Zhichao, Hong, Huixiao, Wu, Jun, Liu, Jinghua, Guo, Lei, Kreil, David P, Łabaj, Paweł P, Zhong, Liping, Bao, Wenjun, Huang, Yong, He, Jian, Zhao, Yongxiang, Tong, Weida, Shi, Tieliu
Publicado 2020

COVID-19 drug practices risk antimicrobial resistance evolution

por Afshinnekoo, Ebrahim, Bhattacharya, Chandrima, Burguete-García, Ana, Castro-Nallar, Eduardo, Deng, Youping, Desnues, Christelle, Dias-Neto, Emmanuel, Elhaik, Eran, Iraola, Gregorio, Jang, Soojin, Łabaj, Paweł P, Mason, Christopher E, Nagarajan, Niranjan, Poulsen, Michael, Prithiviraj, Bharath, Siam, Rania, Shi, Tieliu, Suzuki, Haruo, Werner, Johannes, Zambrano, Maria Mercedes, Bhattacharyya, Malay
Publicado 2021

Scientists without borders: lessons from Ukraine

por Wolfsberger, Walter, Chhugani, Karishma, Shchubelka, Khrystyna, Frolova, Alina, Salyha, Yuriy, Zlenko, Oksana, Arych, Mykhailo, Dziuba, Dmytro, Parkhomenko, Andrii, Smolanka, Volodymyr, Gümüş, Zeynep H, Sezgin, Efe, Diaz-Lameiro, Alondra, Toth, Viktor R, Maci, Megi, Bortz, Eric, Kondrashov, Fyodor, Morton, Patricia M, Łabaj, Paweł P, Romero, Veronika, Hlávka, Jakub, Mangul, Serghei, Oleksyk, Taras K
Publicado 2023

A history of the MetaSUB consortium: Tracking urban microbes around the globe

por Ryon, Krista A., Tierney, Braden T., Frolova, Alina, Kahles, Andre, Desnues, Christelle, Ouzounis, Christos, Gibas, Cynthis, Bezdan, Daniela, Deng, Youping, He, Ding, Dias-Neto, Emmanuel, Elhaik, Eran, Afshin, Evan, Grills, George, Iraola, Gregorio, Suzuki, Haruo, Werner, Johannes, Udekwu, Klas, Schriml, Lynn, Bhattacharyya, Malay, Oliveira, Manuela, Zambrano, Maria Mercedes, Hazrin-Chong, Nur Hazlin, Osuolale, Olayinka, Łabaj, Paweł P., Tiasse, Prisca, Rapuri, Sampath, Borras, Silvia, Pozdniakova, Sofya, Shi, Tieliu, Sezerman, Ugur, Rodo, Xavier, Sezer, Zehra Hazal, Mason, Christopher E.
Publicado 2022

The SEQC2 epigenomics quality control (EpiQC) study

por Foox, Jonathan, Nordlund, Jessica, Lalancette, Claudia, Gong, Ting, Lacey, Michelle, Lent, Samantha, Langhorst, Bradley W., Ponnaluri, V. K. Chaithanya, Williams, Louise, Padmanabhan, Karthik Ramaswamy, Cavalcante, Raymond, Lundmark, Anders, Butler, Daniel, Mozsary, Christopher, Gurvitch, Justin, Greally, John M., Suzuki, Masako, Menor, Mark, Nasu, Masaki, Alonso, Alicia, Sheridan, Caroline, Scherer, Andreas, Bruinsma, Stephen, Golda, Gosia, Muszynska, Agata, Łabaj, Paweł P., Campbell, Matthew A., Wos, Frank, Raine, Amanda, Liljedahl, Ulrika, Axelsson, Tomas, Wang, Charles, Chen, Zhong, Yang, Zhaowei, Li, Jing, Yang, Xiaopeng, Wang, Hongwei, Melnick, Ari, Guo, Shang, Blume, Alexander, Franke, Vedran, Ibanez de Caceres, Inmaculada, Rodriguez-Antolin, Carlos, Rosas, Rocio, Davis, Justin Wade, Ishii, Jennifer, Megherbi, Dalila B., Xiao, Wenming, Liao, Will, Xu, Joshua, Hong, Huixiao, Ning, Baitang, Tong, Weida, Akalin, Altuna, Wang, Yunliang, Deng, Youping, Mason, Christopher E.
Publicado 2021