Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction

por Laczny, Cedric C., Pinel, Nicolás, Vlassis, Nikos, Wilmes, Paul
Publicado 2014

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation

por Laczny, Cedric C., Kiefer, Christina, Galata, Valentina, Fehlmann, Tobias, Backes, Christina, Keller, Andreas
Publicado 2017

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

por Laczny, Cedric C, Sternal, Tomasz, Plugaru, Valentin, Gawron, Piotr, Atashpendar, Arash, Margossian, Houry Hera, Coronado, Sergio, der Maaten, Laurens van, Vlassis, Nikos, Wilmes, Paul
Publicado 2015

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract

por Laczny, Cedric C., Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A., Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul
Publicado 2016

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

por Narayanasamy, Shaman, Jarosz, Yohan, Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Kaysen, Anne, Laczny, Cédric C., Pinel, Nicolás, May, Patrick, Wilmes, Paul
Publicado 2016

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model

por Rupf, Stefan, Laczny, Cedric C., Galata, Valentina, Backes, Christina, Keller, Andreas, Umanskaya, Natalia, Erol, Arzu, Tierling, Sascha, Lo Porto, Christina, Walter, Jörn, Kirsch, Jasmin, Hannig, Matthias, Hannig, Christian
Publicado 2018

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

por Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Publicado 2017

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

por Wampach, Linda, Heintz-Buschart, Anna, Hogan, Angela, Muller, Emilie E. L., Narayanasamy, Shaman, Laczny, Cedric C., Hugerth, Luisa W., Bindl, Lutz, Bottu, Jean, Andersson, Anders F., de Beaufort, Carine, Wilmes, Paul
Publicado 2017

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics

por Hayoun, Karim, Geersens, Emilie, Laczny, Cédric C., Halder, Rashi, Lázaro Sánchez, Carmen, Manna, Abhijit, Bringel, Françoise, Ryckelynck, Michaël, Wilmes, Paul, Muller, Emilie E. L., Alpha-Bazin, Béatrice, Armengaud, Jean, Vuilleumier, Stéphane
Publicado 2020

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates

por Galata, Valentina, Laczny, Cédric C., Backes, Christina, Hemmrich-Stanisak, Georg, Schmolke, Susanne, Franke, Andre, Meese, Eckart, Herrmann, Mathias, von Müller, Lutz, Plum, Achim, Müller, Rolf, Stähler, Cord, Posch, Andreas E., Keller, Andreas
Publicado 2019

Protocol for a multicentre cross-sectional, longitudinal ambulatory clinical trial in rheumatoid arthritis and Parkinson’s disease patients analysing the relation between the gut m...

por Hansen, Bérénice, Laczny, Cédric C, Aho, Velma T E, Frachet-Bour, Audrey, Habier, Janine, Ostaszewski, Marek, Michalsen, Andreas, Hanslian, Etienne, Koppold, Daniela A, Hartmann, Anika M, Steckhan, Nico, Mollenhauer, Brit, Schade, Sebastian, Roomp, Kirsten, Schneider, Jochen G, Wilmes, Paul
Publicado 2023

Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics

por De Saedeleer, Bianca, Malabirade, Antoine, Ramiro-Garcia, Javier, Habier, Janine, Trezzi, Jean-Pierre, Peters, Samantha L., Daujeumont, Annegrät, Halder, Rashi, Jäger, Christian, Busi, Susheel Bhanu, May, Patrick, Oertel, Wolfgang, Mollenhauer, Brit, Laczny, Cédric C., Hettich, Robert L., Wilmes, Paul
Publicado 2021

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado 2015

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado 2014

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

por Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Publicado 2020

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado 2020