CircaDB: a database of mammalian circadian gene expression profiles

por Pizarro, Angel, Hayer, Katharina, Lahens, Nicholas F., Hogenesch, John B.
Publicado 2013

Ribosome profiling reveals an important role for translational control in circadian gene expression

por Jang, Christopher, Lahens, Nicholas F., Hogenesch, John B., Sehgal, Amita
Publicado 2015

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

por Hayer, Katharina E., Pizarro, Angel, Lahens, Nicholas F., Hogenesch, John B., Grant, Gregory R.
Publicado 2015

G1/S cell cycle regulators mediate effects of circadian dysregulation on tumor growth and provide targets for timed anticancer treatment

por Lee, Yool, Lahens, Nicholas F., Zhang, Shirley, Bedont, Joseph, Field, Jeffrey M., Sehgal, Amita
Publicado 2019

Comparative evaluation of full-length isoform quantification from RNA-Seq

por Sarantopoulou, Dimitra, Brooks, Thomas G., Nayak, Soumyashant, Mrčela, Antonijo, Lahens, Nicholas F., Grant, Gregory R.
Publicado 2021

Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank

por Brooks, Thomas G., Lahens, Nicholas F., Grant, Gregory R., Sheline, Yvette I., FitzGerald, Garret A., Skarke, Carsten
Publicado 2023

A circadian clock regulates efflux by the blood-brain barrier in mice and human cells

por Zhang, Shirley L., Lahens, Nicholas F., Yue, Zhifeng, Arnold, Denice M., Pakstis, Peter P., Schwarz, Jessica E., Sehgal, Amita
Publicado 2021

BEERS2: RNA-Seq simulation through high fidelity in silico modeling

por Brooks, Thomas G., Lahens, Nicholas F., Mrčela, Antonijo, Sarantopoulou, Dimitra, Nayak, Soumyashant, Naik, Amruta, Sengupta, Shaon, Choi, Peter S., Grant, Gregory R.
Publicado 2023

Evidence for a role of human blood-borne factors in mediating age-associated changes in molecular circadian rhythms

por Schwarz, Jessica E., Mrčela, Antonijo, Lahens, Nicholas F., Li, Yongjun, Hsu, Cynthia T., Grant, Gregory, Skarke, Carsten, Zhang, Shirley L., Sehgal, Amita
Publicado 2023

A new view of transcriptome complexity and regulation through the lens of local splicing variations

por Vaquero-Garcia, Jorge, Barrera, Alejandro, Gazzara, Matthew R, González-Vallinas, Juan, Lahens, Nicholas F, Hogenesch, John B, Lynch, Kristen W, Barash, Yoseph
Publicado 2016

Dietary challenges differentially affect activity and sleep/wake behavior in mus musculus: Isolating independent associations with diet/energy balance and body weight

por Perron, Isaac J., Keenan, Brendan T., Chellappa, Karthikeyani, Lahens, Nicholas F., Yohn, Nicole L., Shockley, Keith R., Pack, Allan I., Veasey, Sigrid C.
Publicado 2018

Nitecap: An Exploratory Circadian Analysis Web Application

por Brooks, Thomas G., Mrčela, Antonijo, Lahens, Nicholas F., Paschos, Georgios K., Grosser, Tilo, Skarke, Carsten, FitzGerald, Garret A., Grant, Gregory R.
Publicado 2021

MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis

por Slaff, Barry, Radens, Caleb M., Jewell, Paul, Jha, Anupama, Lahens, Nicholas F., Grant, Gregory R., Thomas-Tikhonenko, Andrei, Lynch, Kristen W., Barash, Yoseph
Publicado 2021

Characterization of the genome and silk-gland transcriptomes of Darwin’s bark spider (Caerostris darwini)

por Babb, Paul L., Gregorič, Matjaž, Lahens, Nicholas F., Nicholson, David N., Hayashi, Cheryl Y., Higgins, Linden, Kuntner, Matjaž, Agnarsson, Ingi, Voight, Benjamin F.
Publicado 2022

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

por Lahens, Nicholas F., Ricciotti, Emanuela, Smirnova, Olga, Toorens, Erik, Kim, Eun Ji, Baruzzo, Giacomo, Hayer, Katharina E., Ganguly, Tapan, Schug, Jonathan, Grant, Gregory R.
Publicado 2017

Time-of-day specificity of anticancer drugs may be mediated by circadian regulation of the cell cycle

por Lee, Yool, Fong, Shi Yi, Shon, Joy, Zhang, Shirley L., Brooks, Rebekah, Lahens, Nicholas F., Chen, Dechun, Dang, Chi Van, Field, Jeffrey M., Sehgal, Amita
Publicado 2021

CAMPAREE: a robust and configurable RNA expression simulator

por Lahens, Nicholas F., Brooks, Thomas G., Sarantopoulou, Dimitra, Nayak, Soumyashant, Lawrence, Cris, Mrčela, Antonijo, Srinivasan, Anand, Schug, Jonathan, Hogenesch, John B., Barash, Yoseph, Grant, Gregory R.
Publicado 2021

RNA splicing analysis using heterogeneous and large RNA-seq datasets

por Vaquero-Garcia, Jorge, Aicher, Joseph K., Jewell, San, Gazzara, Matthew R., Radens, Caleb M., Jha, Anupama, Norton, Scott S., Lahens, Nicholas F., Grant, Gregory R., Barash, Yoseph
Publicado 2023

IVT-seq reveals extreme bias in RNA sequencing

por Lahens, Nicholas F, Kavakli, Ibrahim Halil, Zhang, Ray, Hayer, Katharina, Black, Michael B, Dueck, Hannah, Pizarro, Angel, Kim, Junhyong, Irizarry, Rafael, Thomas, Russell S, Grant, Gregory R, Hogenesch, John B
Publicado 2014

Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input

por Sarantopoulou, Dimitra, Tang, Soon Yew, Ricciotti, Emanuela, Lahens, Nicholas F., Lekkas, Damien, Schug, Jonathan, Guo, Xiaofeng S., Paschos, Georgios K., FitzGerald, Garret A., Pack, Allan I., Grant, Gregory R.
Publicado 2019