Complete Genome Sequences of Eight Streptococcus equi subsp. zooepidemicus Strains Isolated from Mares in Estrus with Endometritis

por Borlee, Grace I., Lakin, Steven M., Kapuscinski, Marylee L., Abdo, Zaid, Stenglein, Mark D., McCue, Patrick M., Borlee, Bradley R.
Publicado 2021

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

por Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
Publicado 2019

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

por Lakin, Steven M., Kuhnle, Alan, Alipanahi, Bahar, Noyes, Noelle R., Dean, Chris, Muggli, Martin, Raymond, Rob, Abdo, Zaid, Prosperi, Mattia, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado 2019

MEGARes: an antimicrobial resistance database for high throughput sequencing

por Lakin, Steven M., Dean, Chris, Noyes, Noelle R., Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L., Ruiz, Jaime, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado 2017

Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent

por Zaheer, Rahat, Lakin, Steven M., Polo, Rodrigo Ortega, Cook, Shaun R., Larney, Francis J., Morley, Paul S., Booker, Calvin W., Hannon, Sherry J., Van Domselaar, Gary, Read, Ron R., McAllister, Tim A.
Publicado 2019

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Lakin, Steven M., Dean, Christopher J., Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I., Boucher, Christina, Ruiz, Jamie, Belk, Keith E., Morley, Paul S.
Publicado 2018

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

por Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
Publicado 2019

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

por Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina A., Belk, Keith E., Morley, Paul S.
Publicado 2017

Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics

por Huebner, Katherine L., Martin, Jennifer N., Weissend, Carla J., Holzer, Katlyn L., Parker, Jennifer K., Lakin, Steven M., Doster, Enrique, Weinroth, Margaret D., Abdo, Zaid, Woerner, Dale R., Metcalf, Jessica L., Geornaras, Ifigenia, Bryant, Tony C., Morley, Paul S., Belk, Keith E.
Publicado 2019

Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg

por Oladeinde, Adelumola, Abdo, Zaid, Press, Maximilian O., Cook, Kimberly, Cox, Nelson A., Zwirzitz, Benjamin, Woyda, Reed, Lakin, Steven M., Thomas, Jesse C., Looft, Torey, Cosby, Douglas E., Hinton, Arthur, Guard, Jean, Line, Eric, Rothrock, Michael J., Berrang, Mark E., Herrington, Kyler, Zock, Gregory, Plumblee Lawrence, Jodie, Cudnik, Denice, House, Sandra, Ingram, Kimberly, Lariscy, Leah, Wagner, Martin, Aggrey, Samuel E., Chai, Lilong, Ritz, Casey
Publicado 2021

Erratum for Oladeinde et al., “Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg”

por Oladeinde, Adelumola, Abdo, Zaid, Press, Maximilian O., Cook, Kimberly, Cox, Nelson A., Zwirzitz, Benjamin, Woyda, Reed, Lakin, Steven M., Thomas, Jesse C., Looft, Torey, Cosby, Douglas E., Hinton, Arthur, Guard, Jean, Line, Eric, Rothrock, Michael J., Berrang, Mark E., Herrington, Kyler, Zock, Gregory, Plumblee Lawrence, Jodie, Cudnik, Denice, House, Sandra, Ingram, Kimberly, Lariscy, Leah, Wagner, Martin, Aggrey, Samuel E., Chai, Lilong, Ritz, Casey
Publicado 2021