Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms

por Lapidus, Alla L., Korobeynikov, Anton I.
Publicado 2021

MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data

por Shafranskaya, Daria, Kale, Varsha, Finn, Rob, Lapidus, Alla L., Korobeynikov, Anton, Prjibelski, Andrey D.
Publicado 2022

Accurate isoform discovery with IsoQuant using long reads

por Prjibelski, Andrey D., Mikheenko, Alla, Joglekar, Anoushka, Smetanin, Alexander, Jarroux, Julien, Lapidus, Alla L., Tilgner, Hagen U.
Publicado 2023

Draft genome sequence of Dethiobacter alkaliphilus strain AHT1(T), a gram-positive sulfidogenic polyextremophile

por Melton, Emily Denise, Sorokin, Dimitry Y., Overmars, Lex, Lapidus, Alla L., Pillay, Manoj, Ivanova, Natalia, del Rio, Tijana Glavina, Kyrpides, Nikos C., Woyke, Tanja, Muyzer, Gerard
Publicado 2017

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

por Melton, Emily Denise, Sorokin, Dimitry Y., Overmars, Lex, Chertkov, Olga, Clum, Alicia, Pillay, Manoj, Ivanova, Natalia, Shapiro, Nicole, Kyrpides, Nikos C., Woyke, Tanja, Lapidus, Alla L., Muyzer, Gerard
Publicado 2016

A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production

por McKinlay, James B, Laivenieks, Maris, Schindler, Bryan D, McKinlay, Anastasia A, Siddaramappa, Shivakumara, Challacombe, Jean F, Lowry, Stephen R, Clum, Alicia, Lapidus, Alla L, Burkhart, Kirk B, Harkins, Victoria, Vieille, Claire
Publicado 2010

High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum

por Sakamoto, Mitsuo, Lapidus, Alla L., Han, James, Trong, Stephan, Haynes, Matthew, Reddy, T. B. K., Mikhailova, Natalia, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Pukall, Rüdiger, Markowitz, Victor M., Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., Ohkuma, Moriya
Publicado 2015

Complete genome sequence of Methanospirillum hungatei type strain JF1

por Gunsalus, Robert P., Cook, Lauren E., Crable, Bryan, Rohlin, Lars, McDonald, Erin, Mouttaki, Housna, Sieber, Jessica R., Poweleit, Nicole, Zhou, Hong, Lapidus, Alla L., Daligault, Hajnalka Erzsebet, Land, Miriam, Gilna, Paul, Ivanova, Natalia, Kyrpides, Nikos, Culley, David E., McInerney, Michael J.
Publicado 2016

Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))

por Plugge, Caroline M., Henstra, Anne M., Worm, Petra, Swarts, Daan C., Paulitsch-Fuchs, Astrid H., Scholten, Johannes C.M., Lykidis, Athanasios, Lapidus, Alla L., Goltsman, Eugene, Kim, Edwin, McDonald, Erin, Rohlin, Lars, Crable, Bryan R., Gunsalus, Robert P., Stams, Alfons J.M., McInerney, Michael J.
Publicado 2012

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology

por Chernyaeva, Ekaterina N, Shulgina, Marina V, Rotkevich, Mikhail S, Dobrynin, Pavel V, Simonov, Serguei A, Shitikov, Egor A, Ischenko, Dmitry S, Karpova, Irina Y, Kostryukova, Elena S, Ilina, Elena N, Govorun, Vadim M, Zhuravlev, Vyacheslav Y, Manicheva, Olga A, Yablonsky, Peter K, Isaeva, Yulia D, Nosova, Elena Y, Mokrousov, Igor V, Vyazovaya, Anna A, Narvskaya, Olga V, Lapidus, Alla L, O’Brien, Stephen J
Publicado 2014

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwat...

por Ramsay, Bradley D., Hwang, Chiachi, Woo, Hannah L., Carroll, Sue L., Lucas, Susan, Han, James, Lapidus, Alla L., Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Lin, Chertkov, Olga, Held, Brittany, Detter, John C., Han, Cliff S., Tapia, Roxanne, Land, Miriam L., Hauser, Loren J., Kyrpides, Nikos C., Ivanova, Natalia N., Mikhailova, Natalia, Pagani, Ioanna, Woyke, Tanja, Arkin, Adam P., Dehal, Paramvir, Chivian, Dylan, Criddle, Craig S., Wu, Weimin, Chakraborty, Romy, Hazen, Terry C., Fields, Matthew W.
Publicado 2015