Ancient DNA provides evidence of 27,000-year-old papillomavirus infection and long-term codivergence with rodents

por Larsen, Brendan B, Cole, Kenneth L, Worobey, Michael
Publicado 2018

Coevolutionary Analysis Implicates Toll-Like Receptor 9 in Papillomavirus Restriction

por King, Kelly, Larsen, Brendan B., Gryseels, Sophie, Richet, Cécile, Kraberger, Simona, Jackson, Robert, Worobey, Michael, Harrison, Joseph S., Varsani, Arvind, Van Doorslaer, Koenraad
Publicado 2022

Improved Detection of Rare HIV-1 Variants using 454 Pyrosequencing

por Larsen, Brendan B., Chen, Lennie, Maust, Brandon S., Kim, Moon, Zhao, Hong, Deng, Wenjie, Westfall, Dylan, Beck, Ingrid, Frenkel, Lisa M., Mullins, James I.
Publicado 2013

Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection

por Iyer, Shyamala, Casey, Eleanor, Bouzek, Heather, Kim, Moon, Deng, Wenjie, Larsen, Brendan B., Zhao, Hong, Bumgarner, Roger E., Rolland, Morgane, Mullins, James I.
Publicado 2015

Discovery of three cycloviruses in fecal samples from silver-haired bats (Lasionycteris noctivagans) in Arizona (USA)

por Harding, Ciara, Larsen, Brendan B., Gryseels, Sophie, Otto, Hans W., Suazo, Crystal, Kraberger, Simona, Upham, Nathan S., Worobey, Michael, Van Doorslaer, Koenraad, Varsani, Arvind
Publicado 2022

The emergence of SARS-CoV-2 in Europe and the US

por Worobey, Michael, Pekar, Jonathan, Larsen, Brendan B., Nelson, Martha I., Hill, Verity, Joy, Jeffrey B., Rambaut, Andrew, Suchard, Marc A., Wertheim, Joel O., Lemey, Philippe
Publicado 2020

The emergence of SARS-CoV-2 in Europe and North America

por Worobey, Michael, Pekar, Jonathan, Larsen, Brendan B., Nelson, Martha I., Hill, Verity, Joy, Jeffrey B., Rambaut, Andrew, Suchard, Marc A., Wertheim, Joel O., Lemey, Philippe
Publicado 2020

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

por Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Publicado 2020

CD8 and CD4 Epitope Predictions in RV144: No Strong Evidence of a T-Cell Driven Sieve Effect in HIV-1 Breakthrough Sequences from Trial Participants

por Dommaraju, Kalpana, Kijak, Gustavo, Carlson, Jonathan M., Larsen, Brendan B., Tovanabutra, Sodsai, Geraghty, Dan E., Deng, Wenjie, Maust, Brandon S., Edlefsen, Paul T., Sanders-Buell, Eric, Ratto-Kim, Silvia, deSouza, Mark S., Rerks-Ngarm, Supachai, Nitayaphan, Sorachai, Pitisuttihum, Punnee, Kaewkungwal, Jaranit, O'Connell, Robert J., Robb, Merlin L., Michael, Nelson L., Mullins, James I., Kim, Jerome H., Rolland, Morgane
Publicado 2014

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

por Ladner, Jason T., Larsen, Brendan B., Bowers, Jolene R., Hepp, Crystal M., Bolyen, Evan, Folkerts, Megan, Sheridan, Krystal, Pfeiffer, Ashlyn, Yaglom, Hayley, Lemmer, Darrin, Sahl, Jason W., Kaelin, Emily A., Maqsood, Rabia, Bokulich, Nicholas A., Quirk, Grace, Watts, Thomas D., Komatsu, Kenneth K., Waddell, Victor, Lim, Efrem S., Caporaso, J. Gregory, Engelthaler, David M., Worobey, Michael, Keim, Paul
Publicado 2020

Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial

por Edlefsen, Paul T., Rolland, Morgane, Hertz, Tomer, Tovanabutra, Sodsai, Gartland, Andrew J., deCamp, Allan C., Magaret, Craig A., Ahmed, Hasan, Gottardo, Raphael, Juraska, Michal, McCoy, Connor, Larsen, Brendan B., Sanders-Buell, Eric, Carrico, Chris, Menis, Sergey, Bose, Meera, Arroyo, Miguel A., O’Connell, Robert J., Nitayaphan, Sorachai, Pitisuttithum, Punnee, Kaewkungwal, Jaranit, Rerks-Ngarm, Supachai, Robb, Merlin L., Kirys, Tatsiana, Georgiev, Ivelin S., Kwong, Peter D., Scheffler, Konrad, Pond, Sergei L. Kosakovsky, Carlson, Jonathan M., Michael, Nelson L., Schief, William R., Mullins, James I., Kim, Jerome H., Gilbert, Peter B.
Publicado 2015

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env-V2

por Rolland, Morgane, Edlefsen, Paul T., Larsen, Brendan B., Tovanabutra, Sodsai, Sanders-Buell, Eric, Hertz, Tomer, deCamp, Allan C., Carrico, Chris, Menis, Sergey, Magaret, Craig A., Ahmed, Hasan, Juraska, Michal, Chen, Lennie, Konopa, Philip, Nariya, Snehal, Stoddard, Julia N., Wong, Kim, Zhao, Hong, Deng, Wenjie, Maust, Brandon S., Bose, Meera, Howell, Shana, Bates, Adam, Lazzaro, Michelle, O'Sullivan, Annemarie, Lei, Esther, Bradfield, Andrea, Ibitamuno, Grace, Assawadarachai, Vatcharain, O'Connell, Robert J., deSouza, Mark S., Nitayaphan, Sorachai, Rerks-Ngarm, Supachai, Robb, Merlin L., McLellan, Jason S., Georgiev, Ivelin, Kwong, Peter D., Carlson, Jonathan M., Michael, Nelson L., Schief, William R., Gilbert, Peter B., Mullins, James I., Kim, Jerome H.
Publicado 2012

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

por Washington, Nicole L., Gangavarapu, Karthik, Zeller, Mark, Bolze, Alexandre, Cirulli, Elizabeth T., Barrett, Kelly M. Schiabor, Larsen, Brendan B., Anderson, Catelyn, White, Simon, Cassens, Tyler, Jacobs, Sharoni, Levan, Geraint, Nguyen, Jason, Ramirez, Jimmy M., Rivera-Garcia, Charlotte, Sandoval, Efren, Wang, Xueqing, Wong, David, Spencer, Emily, Robles-Sikisaka, Refugio, Kurzban, Ezra, Hughes, Laura D., Deng, Xianding, Wang, Candace, Servellita, Venice, Valentine, Holly, De Hoff, Peter, Seaver, Phoebe, Sathe, Shashank, Gietzen, Kimberly, Sickler, Brad, Antico, Jay, Hoon, Kelly, Liu, Jingtao, Harding, Aaron, Bakhtar, Omid, Basler, Tracy, Austin, Brett, Isaksson, Magnus, Febbo, Phillip G., Becker, David, Laurent, Marc, McDonald, Eric, Yeo, Gene W., Knight, Rob, Laurent, Louise C., de Feo, Eileen, Worobey, Michael, Chiu, Charles, Suchard, Marc A., Lu, James T., Lee, William, Andersen, Kristian G.
Publicado 2021

Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

por Washington, Nicole L., Gangavarapu, Karthik, Zeller, Mark, Bolze, Alexandre, Cirulli, Elizabeth T., Schiabor Barrett, Kelly M., Larsen, Brendan B., Anderson, Catelyn, White, Simon, Cassens, Tyler, Jacobs, Sharoni, Levan, Geraint, Nguyen, Jason, Ramirez, Jimmy M., Rivera-Garcia, Charlotte, Sandoval, Efren, Wang, Xueqing, Wong, David, Spencer, Emily, Robles-Sikisaka, Refugio, Kurzban, Ezra, Hughes, Laura D., Deng, Xianding, Wang, Candace, Servellita, Venice, Valentine, Holly, De Hoff, Peter, Seaver, Phoebe, Sathe, Shashank, Gietzen, Kimberly, Sickler, Brad, Antico, Jay, Hoon, Kelly, Liu, Jingtao, Harding, Aaron, Bakhtar, Omid, Basler, Tracy, Austin, Brett, MacCannell, Duncan, Isaksson, Magnus, Febbo, Phillip G., Becker, David, Laurent, Marc, McDonald, Eric, Yeo, Gene W., Knight, Rob, Laurent, Louise C., de Feo, Eileen, Worobey, Michael, Chiu, Charles Y., Suchard, Marc A., Lu, James T., Lee, William, Andersen, Kristian G.
Publicado 2021