Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes

por Lavender, Christopher A., Gorelick, Robert J., Weeks, Kevin M.
Publicado 2015

Three-Dimensional RNA Structure Refinement by Hydroxyl Radical Probing

por Ding, Feng, Lavender, Christopher A., Weeks, Kevin M., Dokholyan, Nikolay V.
Publicado 2012

ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets

por Lavender, Christopher A., Shapiro, Andrew J., Day, Frank S., Fargo, David C.
Publicado 2020

Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA

por Lavender, Christopher A., Lorenz, Ronny, Zhang, Ge, Tamayo, Rita, Hofacker, Ivo L., Weeks, Kevin M.
Publicado 2015

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data

por Lavender, Christopher A., Shapiro, Andrew J., Burkholder, Adam B., Bennett, Brian D., Adelman, Karen, Fargo, David C.
Publicado 2017

Muver, a computational framework for accurately calling accumulated mutations

por Burkholder, Adam B., Lujan, Scott A., Lavender, Christopher A., Grimm, Sara A., Kunkel, Thomas A., Fargo, David C.
Publicado 2018

Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity

por Meers, Michael P, Henriques, Telmo, Lavender, Christopher A, McKay, Daniel J, Strahl, Brian D, Duronio, Robert J, Adelman, Karen, Matera, A Gregory
Publicado 2017

Widespread transcriptional pausing and elongation control at enhancers

por Henriques, Telmo, Scruggs, Benjamin S., Inouye, Michiko O., Muse, Ginger W., Williams, Lucy H., Burkholder, Adam B., Lavender, Christopher A., Fargo, David C., Adelman, Karen
Publicado 2018

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters

por Lavender, Christopher A., Cannady, Kimberly R., Hoffman, Jackson A., Trotter, Kevin W., Gilchrist, Daniel A., Bennett, Brian D., Burkholder, Adam B., Burd, Craig J., Fargo, David C., Archer, Trevor K.
Publicado 2016

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

por Oldfield, Andrew J., Henriques, Telmo, Kumar, Dhirendra, Burkholder, Adam B., Cinghu, Senthilkumar, Paulet, Damien, Bennett, Brian D., Yang, Pengyi, Scruggs, Benjamin S., Lavender, Christopher A., Rivals, Eric, Adelman, Karen, Jothi, Raja
Publicado 2019

Revealing a human p53 universe

por Nguyen, Thuy-Ai T, Grimm, Sara A, Bushel, Pierre R, Li, Jianying, Li, Yuanyuan, Bennett, Brian D, Lavender, Christopher A, Ward, James M, Fargo, David C, Anderson, Carl W, Li, Leping, Resnick, Michael A, Menendez, Daniel
Publicado 2018

Ultrasensitive deletion detection links mitochondrial DNA replication, disease, and aging

por Lujan, Scott A., Longley, Matthew J., Humble, Margaret H., Lavender, Christopher A., Burkholder, Adam, Blakely, Emma L., Alston, Charlotte L., Gorman, Grainne S., Turnbull, Doug M., McFarland, Robert, Taylor, Robert W., Kunkel, Thomas A., Copeland, William C.
Publicado 2020

Opportunities and obstacles for deep learning in biology and medicine

por Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Publicado 2018