Paired-end read length lower bounds for genome re-sequencing

por Chikhi, Rayan, Lavenier, Dominique
Publicado 2009

GASSST: global alignment short sequence search tool

por Rizk, Guillaume, Lavenier, Dominique
Publicado 2010

QuickDeconvolution: fast and scalable deconvolution of linked-read sequencing data

por Faure, Roland, Lavenier, Dominique
Publicado 2022

PLAST: parallel local alignment search tool for database comparison

por Nguyen, Van Hoa, Lavenier, Dominique
Publicado 2009

Compareads: comparing huge metagenomic experiments

por Maillet, Nicolas, Lemaitre, Claire, Chikhi, Rayan, Lavenier, Dominique, Peterlongo, Pierre
Publicado 2012

Optimal neighborhood indexing for protein similarity search

por Peterlongo, Pierre, Noé, Laurent, Lavenier, Dominique, Nguyen, Van Hoa, Kucherov, Gregory, Giraud, Mathieu
Publicado 2008

GATB: Genome Assembly & Analysis Tool Box

por Drezen, Erwan, Rizk, Guillaume, Chikhi, Rayan, Deltel, Charles, Lemaitre, Claire, Peterlongo, Pierre, Lavenier, Dominique
Publicado 2014

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

por Benoit, Gaëtan, Lemaitre, Claire, Lavenier, Dominique, Drezen, Erwan, Dayris, Thibault, Uricaru, Raluca, Rizk, Guillaume
Publicado 2015

Complete Genome Sequences of Two Strains of Streptococcus pyogenes Belonging to an Emergent Clade of the Genotype emm89 in Brittany, France

por Devaere, Marie, Boukthir, Sarrah, Moullec, Séverine, Roux, Emeline, Lavenier, Dominique, Faili, Ahmad, Kayal, Samer
Publicado 2020

Genome Sequence of the Uncommon Streptococcus pyogenes M/emm66 Strain STAB13021, Isolated from Clonal Clustered Cases in French Brittany

por Meygret, Alexandra, Vincent, Pascal, Moullec, Séverine, Nacazume, Jessica, Adnani, Yahia, Lavenier, Dominique, Kayal, Samer, Faili, Ahmad
Publicado 2016

Full Sequencing and Genomic Analysis of Three emm75 Group A Streptococcus Strains Recovered in the Course of an Epidemiological Shift in French Brittany

por Rochefort, Aude, Boukthir, Sarrah, Moullec, Séverine, Meygret, Alexandra, Adnani, Yahia, Lavenier, Dominique, Faili, Ahmad, Kayal, Samer
Publicado 2017

A broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish

por Yazbeck, Gabriel M., Oliveira, Rafael Sachetto, Ribeiro, José Mauro, Graciano, Raíssa D., Santos, Rosiane P., Carmo, Fausto M. S., Lavenier, Dominique
Publicado 2018

Author Correction: A broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish

por Yazbeck, Gabriel M., Oliveira, Rafael Sachetto, Ribeiro, José Mauro, Graciano, Raíssa D., Santos, Rosiane P., Carmo, Fausto M. S., Lavenier, Dominique
Publicado 2020

Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum

por Legeai, Fabrice, Rizk, Guillaume, Walsh, Thomas, Edwards, Owain, Gordon, Karl, Lavenier, Dominique, Leterme, Nathalie, Méreau, Agnès, Nicolas, Jacques, Tagu, Denis, Jaubert-Possamai, Stéphanie
Publicado 2010

Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61

por Falentin, Hélène, Naquin, Delphine, Loux, Valentin, Barloy-Hubler, Frédérique, Loubière, Pascal, Nouaille, Sébastien, Lavenier, Dominique, Le Bourgeois, Pascal, François, Patrice, Schrenzel, Jacques, Hernandez, David, Even, Sergine, Le Loir, Yves
Publicado 2014

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

por Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock, Swarbreck, David, Hogenhout, Saskia A.
Publicado 2017

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

por Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock, Swarbreck, David, Hogenhout, Saskia A.
Publicado 2017

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

por Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
Publicado 2013