317 Omics based analysis to identify novel markers of TMZ response in Glioblastoma Multiforme

por Reed, Megan R., De Loose, Annick, Guzman, Grace, Lyle, A. Geoffrey, Learned, Katrina, Vaske, Olena M., Rodriguez, Analiz
Publicado 2023

323 Generation of a functional precision medicine pipeline which combines comparative transcriptomics and tumor organoid modeling to identify bespoke treatment strategies for gliob...

por Reed, Megan R., Lyle, A. Geoffrey, De Loose, Annick, Learned, Katrina, Vibat, Cecile Rose T., Wardell, Christopher P., Eoff, Robert L., Vaske, Olena M., Rodriguez, Analiz
Publicado 2022

Barriers to accessing public cancer genomic data

por Learned, Katrina, Durbin, Ann, Currie, Robert, Kephart, Ellen Towle, Beale, Holly C., Sanders, Lauren M., Pfeil, Jacob, Goldstein, Theodore C., Salama, Sofie R., Haussler, David, Vaske, Olena Morozova, Bjork, Isabel M.
Publicado 2019

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma

por Sanders, Lauren M, Cheney, Allison, Seninge, Lucas, van den Bout, Anouk, Chen, Marissa, Beale, Holly C, Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R, Vaske, Olena M
Publicado 2020

Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors

por Sanders, Lauren M., Chandra, Rahul, Zebarjadi, Navid, Beale, Holly C., Lyle, A. Geoffrey, Rodriguez, Analiz, Kephart, Ellen Towle, Pfeil, Jacob, Cheney, Allison, Learned, Katrina, Currie, Rob, Gitlin, Leonid, Vengerov, David, Haussler, David, Salama, Sofie R., Vaske, Olena M.
Publicado 2022

BIOL-20. BIOPROCESSING OF SURGICAL PEDIATRIC BRAIN TUMOR SPECIMENS FOR GENOME-GUIDED PERSONALIZED DRUG TESTING

por Nasajpour, Emon, Tran, Caitlynn, Garcia, Cesar, Lyle, Geoff, Guinle, Maria I Barros, Bagley, Bryce A, Lancero, Hope, Gibson, Eden E, Schouten, Troy, Mahaney, Kelly, Vogel, Hannes, Learned, Katrina, Vaske, Olena, Grant, Gerald A, Prolo, Laura M, Petritsch, Claudia K
Publicado 2023

Metastatic pediatric sclerosing epithelioid fibrosarcoma

por Woods, Andrew D., Purohit, Reshma, Mitchell, Laura Crocker, Collier, John R., Collier, Katherine A., Lathara, Melvin, Learned, Katrina, Vaske, Olena, Geiger, Heather, Wrzeszczynski, Kazimierz O., Jobanputra, Vaidehi, Srinivasa, Ganapati, Rudzinski, Erin R., Whelan, Kimberly, Beierle, Elizabeth, Spunt, Sheri L., Keller, Charles, Wadhwa, Aman
Publicado 2021

ENCODE whole-genome data in the UCSC Genome Browser

por Rosenbloom, Kate R., Dreszer, Timothy R., Pheasant, Michael, Barber, Galt P., Meyer, Laurence R., Pohl, Andy, Raney, Brian J., Wang, Ting, Hinrichs, Angie S., Zweig, Ann S., Fujita, Pauline A., Learned, Katrina, Rhead, Brooke, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Haussler, David, Kent, W. James
Publicado 2010

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

por Beale, Holly C, Roger, Jacquelyn M, Cattle, Matthew A, McKay, Liam T, Thompson, Drew K A, Learned, Katrina, Lyle, A Geoffrey, Kephart, Ellen T, Currie, Rob, Lam, Du Linh, Sanders, Lauren, Pfeil, Jacob, Vivian, John, Bjork, Isabel, Salama, Sofie R, Haussler, David, Vaske, Olena M
Publicado 2021

ENCODE Data in the UCSC Genome Browser: year 5 update

por Rosenbloom, Kate R., Sloan, Cricket A., Malladi, Venkat S., Dreszer, Timothy R., Learned, Katrina, Kirkup, Vanessa M., Wong, Matthew C., Maddren, Morgan, Fang, Ruihua, Heitner, Steven G., Lee, Brian T., Barber, Galt P., Harte, Rachel A., Diekhans, Mark, Long, Jeffrey C., Wilder, Steven P., Zweig, Ann S., Karolchik, Donna, Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado 2013

The UCSC Genome Browser database: 2016 update

por Speir, Matthew L., Zweig, Ann S., Rosenbloom, Kate R., Raney, Brian J., Paten, Benedict, Nejad, Parisa, Lee, Brian T., Learned, Katrina, Karolchik, Donna, Hinrichs, Angie S., Heitner, Steve, Harte, Rachel A., Haeussler, Maximilian, Guruvadoo, Luvina, Fujita, Pauline A., Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado 2016

A Functional Precision Medicine Pipeline Combines Comparative Transcriptomics and Tumor Organoid Modeling to Identify Bespoke Treatment Strategies for Glioblastoma

por Reed, Megan R., Lyle, A. Geoffrey, De Loose, Annick, Maddukuri, Leena, Learned, Katrina, Beale, Holly C., Kephart, Ellen T., Cheney, Allison, van den Bout, Anouk, Lee, Madison P., Hundley, Kelsey N., Smith, Ashley M., DesRochers, Teresa M., Vibat, Cecile Rose T., Gokden, Murat, Salama, Sofie, Wardell, Christopher P., Eoff, Robert L., Vaske, Olena M., Rodriguez, Analiz
Publicado 2021

The UCSC Genome Browser database: update 2010

por Rhead, Brooke, Karolchik, Donna, Kuhn, Robert M., Hinrichs, Angie S., Zweig, Ann S., Fujita, Pauline A., Diekhans, Mark, Smith, Kayla E., Rosenbloom, Kate R., Raney, Brian J., Pohl, Andy, Pheasant, Michael, Meyer, Laurence R., Learned, Katrina, Hsu, Fan, Hillman-Jackson, Jennifer, Harte, Rachel A., Giardine, Belinda, Dreszer, Timothy R., Clawson, Hiram, Barber, Galt P., Haussler, David, Kent, W. James
Publicado 2010

ENCODE whole-genome data in the UCSC genome browser (2011 update)

por Raney, Brian J., Cline, Melissa S., Rosenbloom, Kate R., Dreszer, Timothy R., Learned, Katrina, Barber, Galt P., Meyer, Laurence R., Sloan, Cricket A., Malladi, Venkat S., Roskin, Krishna M., Suh, Bernard B., Hinrichs, Angie S., Clawson, Hiram, Zweig, Ann S., Kirkup, Vanessa, Fujita, Pauline A., Rhead, Brooke, Smith, Kayla E., Pohl, Andy, Kuhn, Robert M., Karolchik, Donna, Haussler, David, Kent, W. James
Publicado 2011

The UCSC Genome Browser database: 2014 update

por Karolchik, Donna, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Cline, Melissa S., Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A., Heitner, Steve, Hinrichs, Angie S., Learned, Katrina, Lee, Brian T., Li, Chin H., Raney, Brian J., Rhead, Brooke, Rosenbloom, Kate R., Sloan, Cricket A., Speir, Matthew L., Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado 2014

The UCSC Genome Browser database: update 2011

por Fujita, Pauline A., Rhead, Brooke, Zweig, Ann S., Hinrichs, Angie S., Karolchik, Donna, Cline, Melissa S., Goldman, Mary, Barber, Galt P., Clawson, Hiram, Coelho, Antonio, Diekhans, Mark, Dreszer, Timothy R., Giardine, Belinda M., Harte, Rachel A., Hillman-Jackson, Jennifer, Hsu, Fan, Kirkup, Vanessa, Kuhn, Robert M., Learned, Katrina, Li, Chin H., Meyer, Laurence R., Pohl, Andy, Raney, Brian J., Rosenbloom, Kate R., Smith, Kayla E., Haussler, David, Kent, W. James
Publicado 2011

Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor

por Sanders, Lauren M., Rangaswami, Arun, Bjork, Isabel, Lam, Du Linh, Beale, Holly C., Kephart, Ellen Towle, Durbin, Ann, Learned, Katrina, Currie, Rob, Lyle, A. Geoffrey, Pfeil, Jacob, Shah, Avanthi Tayi, Lee, Alex G., Leung, Stanley G., Behroozfard, Inge H., Breese, Marcus R., Peralez, Jennifer, Hazard, Florette K., Lacayo, Norman, Spunt, Sheri L., Haussler, David, Salama, Sofie R., Sweet-Cordero, E. Alejandro, Vaske, Olena M.
Publicado 2019

The UCSC Genome Browser database: extensions and updates 2011

por Dreszer, Timothy R., Karolchik, Donna, Zweig, Ann S., Hinrichs, Angie S., Raney, Brian J., Kuhn, Robert M., Meyer, Laurence R., Wong, Mathew, Sloan, Cricket A., Rosenbloom, Kate R., Roe, Greg, Rhead, Brooke, Pohl, Andy, Malladi, Venkat S., Li, Chin H., Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Harte, Rachel A., Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M., Fujita, Pauline A., Diekhans, Mark, Cline, Melissa S., Clawson, Hiram, Barber, Galt P., Haussler, David, James Kent, W.
Publicado 2012

ENCODE whole-genome data in the UCSC Genome Browser: update 2012

por Rosenbloom, Kate R., Dreszer, Timothy R., Long, Jeffrey C., Malladi, Venkat S., Sloan, Cricket A., Raney, Brian J., Cline, Melissa S., Karolchik, Donna, Barber, Galt P., Clawson, Hiram, Diekhans, Mark, Fujita, Pauline A., Goldman, Mary, Gravell, Robert C., Harte, Rachel A., Hinrichs, Angie S., Kirkup, Vanessa M., Kuhn, Robert M., Learned, Katrina, Maddren, Morgan, Meyer, Laurence R., Pohl, Andy, Rhead, Brooke, Wong, Matthew C., Zweig, Ann S., Haussler, David, Kent, W. James
Publicado 2012

The UCSC Genome Browser database: 2015 update

por Rosenbloom, Kate R., Armstrong, Joel, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A., Heitner, Steve, Hickey, Glenn, Hinrichs, Angie S., Hubley, Robert, Karolchik, Donna, Learned, Katrina, Lee, Brian T., Li, Chin H., Miga, Karen H., Nguyen, Ngan, Paten, Benedict, Raney, Brian J., Smit, Arian F. A., Speir, Matthew L., Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado 2014