Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses

por Lee, Alexandra J., Bhattacharya, Roshni, Scheuermann, Richard H., Pickett, Brett E.
Publicado 2017

Correcting for experiment-specific variability in expression compendia can remove underlying signals

por Lee, Alexandra J, Park, YoSon, Doing, Georgia, Hogan, Deborah A, Greene, Casey S
Publicado 2020

Using genome-wide expression compendia to study microorganisms

por Lee, Alexandra J., Reiter, Taylor, Doing, Georgia, Oh, Julia, Hogan, Deborah A., Greene, Casey S.
Publicado 2022

Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14

por Lee, Alexandra J., Doing, Georgia, Neff, Samuel L., Reiter, Taylor, Hogan, Deborah A., Greene, Casey S.
Publicado 2022

The Coming of Age of Nucleic Acid Vaccines during COVID-19

por Rando, Halie M., Lordan, Ronan, Kolla, Likhitha, Sell, Elizabeth, Lee, Alexandra J., Wellhausen, Nils, Naik, Amruta, Kamil, Jeremy P.
Publicado 2023

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

por Rando, Halie M., Lordan, Ronan, Lee, Alexandra J., Naik, Amruta, Wellhausen, Nils, Sell, Elizabeth, Kolla, Likhitha, Gitter, Anthony, Greene, Casey S.
Publicado 2023

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

por Rando, Halie M., Lordan, Ronan, Lee, Alexandra J., Naik, Amruta, Wellhausen, Nils, Sell, Elizabeth, Kolla, Likhitha, Gitter, Anthony, Greene, Casey S.
Publicado 2023

Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia

por Doing, Georgia, Lee, Alexandra J., Neff, Samuel L., Reiter, Taylor, Holt, Jacob D., Stanton, Bruce A., Greene, Casey S., Hogan, Deborah A.
Publicado 2022

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses

por Lee, Alexandra J., Mould, Dallas L., Crawford, Jake, Hu, Dongbo, Powers, Rani K., Doing, Georgia, Costello, James C., Hogan, Deborah A., Greene, Casey S.
Publicado 2022

The Coming of Age of Nucleic Acid Vaccines during COVID-19

por Rando, Halie M., Lordan, Ronan, Kolla, Likhitha, Sell, Elizabeth, Lee, Alexandra J., Wellhausen, Nils, Naik, Amruta, Kamil, Jeremy P., Gitter, Anthony, Greene, Casey S.
Publicado 2023

Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak

por Zhang, Yun, Cao, Jing, Zhang, Song, Lee, Alexandra J., Sun, Guangyu, Larsen, Christopher N., Zhao, Hongtao, Gu, Zhiping, He, Sherry, Klem, Edward B., Scheuermann, Richard H.
Publicado 2016

CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies

por Neff, Samuel L., Hampton, Thomas H., Puerner, Charles, Cengher, Liviu, Doing, Georgia, Lee, Alexandra J., Koeppen, Katja, Cheung, Ambrose L., Hogan, Deborah A., Cramer, Robert A., Stanton, Bruce A.
Publicado 2022

Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells

por Pedersen, Natasja Wulff, Chandran, P. Anoop, Qian, Yu, Rebhahn, Jonathan, Petersen, Nadia Viborg, Hoff, Mathilde Dalsgaard, White, Scott, Lee, Alexandra J., Stanton, Rick, Halgreen, Charlotte, Jakobsen, Kivin, Mosmann, Tim, Gouttefangeas, Cécile, Chan, Cliburn, Scheuermann, Richard H., Hadrup, Sine Reker
Publicado 2017

Ten quick tips for deep learning in biology

por Lee, Benjamin D., Gitter, Anthony, Greene, Casey S., Raschka, Sebastian, Maguire, Finlay, Titus, Alexander J., Kessler, Michael D., Lee, Alexandra J., Chevrette, Marc G., Stewart, Paul Allen, Britto-Borges, Thiago, Cofer, Evan M., Yu, Kun-Hsing, Carmona, Juan Jose, Fertig, Elana J., Kalinin, Alexandr A., Signal, Brandon, Lengerich, Benjamin J., Triche, Timothy J., Boca, Simina M.
Publicado 2022

Identification and Development of Therapeutics for COVID-19

por Rando, Halie M., Wellhausen, Nils, Ghosh, Soumita, Lee, Alexandra J., Dattoli, Anna Ada, Hu, Fengling, Byrd, James Brian, Rafizadeh, Diane N., Lordan, Ronan, Qi, Yanjun, Sun, Yuchen, Brueffer, Christian, Field, Jeffrey M., Guebila, Marouen Ben, Jadavji, Nafisa M., Skelly, Ashwin N., Ramsundar, Bharath, Wang, Jinhui, Goel, Rishi Raj, Park, YoSon, Boca, Simina M., Gitter, Anthony, Greene, Casey S.
Publicado 2021

Identification and Development of Therapeutics for COVID-19

por Rando, Halie M., Wellhausen, Nils, Ghosh, Soumita, Lee, Alexandra J., Dattoli, Anna Ada, Hu, Fengling, Byrd, James Brian, Rafizadeh, Diane N., Lordan, Ronan, Qi, Yanjun, Sun, Yuchen, Brueffer, Christian, Field, Jeffrey M., Ben Guebila, Marouen, Jadavji, Nafisa M., Skelly, Ashwin N., Ramsundar, Bharath, Wang, Jinhui, Goel, Rishi Raj, Park, YoSon, Boca, Simina M., Gitter, Anthony, Greene, Casey S.
Publicado 2021

Influenza Research Database: An integrated bioinformatics resource for influenza virus research

por Zhang, Yun, Aevermann, Brian D., Anderson, Tavis K., Burke, David F., Dauphin, Gwenaelle, Gu, Zhiping, He, Sherry, Kumar, Sanjeev, Larsen, Christopher N., Lee, Alexandra J., Li, Xiaomei, Macken, Catherine, Mahaffey, Colin, Pickett, Brett E., Reardon, Brian, Smith, Thomas, Stewart, Lucy, Suloway, Christian, Sun, Guangyu, Tong, Lei, Vincent, Amy L., Walters, Bryan, Zaremba, Sam, Zhao, Hongtao, Zhou, Liwei, Zmasek, Christian, Klem, Edward B., Scheuermann, Richard H.
Publicado 2017

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

por Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, McGowan, Lucy D’Agostino, Guebila, Marouen Ben, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Sun, Yuchen, Mai, David, Boerckel, Joel D, Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L, Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
Publicado 2021

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

por Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, D’Agostino McGowan, Lucy, Ben Guebila, Marouen, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Mai, David, Sun, Yuchen, Boerckel, Joel D., Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L., Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
Publicado 2021

Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”

por Rando, Halie M., MacLean, Adam L., Lee, Alexandra J., Lordan, Ronan, Ray, Sandipan, Bansal, Vikas, Skelly, Ashwin N., Sell, Elizabeth, Dziak, John J., Shinholster, Lamonica, D’Agostino McGowan, Lucy, Ben Guebila, Marouen, Wellhausen, Nils, Knyazev, Sergey, Boca, Simina M., Capone, Stephen, Qi, Yanjun, Park, YoSon, Mai, David, Sun, Yuchen, Boerckel, Joel D., Brueffer, Christian, Byrd, James Brian, Kamil, Jeremy P., Wang, Jinhui, Velazquez, Ryan, Szeto, Gregory L., Barton, John P., Goel, Rishi Raj, Mangul, Serghei, Lubiana, Tiago, Gitter, Anthony, Greene, Casey S.
Publicado 2022