Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules

por Schwartz, Jerrod J, Lee, Choli, Shendure, Jay
Publicado 2012

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

por Roach, David J., Burton, Joshua N., Lee, Choli, Stackhouse, Bethany, Butler-Wu, Susan M., Cookson, Brad T., Shendure, Jay, Salipante, Stephen J.
Publicado 2015

Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

por Roach, David J., Burton, Joshua N., Lee, Choli, Stackhouse, Bethany, Butler-Wu, Susan M., Cookson, Brad T., Shendure, Jay, Salipante, Stephen J.
Publicado 2017

A Three-Dimensional Model of the Yeast Genome

por Duan, Zhijun, Andronescu, Mirela, Schutz, Kevin, Mcllwain, Sean, Kim, Yoo Jung, Lee, Choli, Shendure, Jay, Fields, Stanley, Blau, C. Anthony, Noble, William S.
Publicado 2010

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

por Adey, Andrew, Burton, Joshua N., Kitzman, Jacob O., Hiatt, Joseph B., Lewis, Alexandra P., Martin, Beth K., Qiu, Ruolan, Lee, Choli, Shendure, Jay
Publicado 2013

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

por Salipante, Stephen J., Roach, David J., Kitzman, Jacob O., Snyder, Matthew W., Stackhouse, Bethany, Butler-Wu, Susan M., Lee, Choli, Cookson, Brad T., Shendure, Jay
Publicado 2015

Whole genome prediction for preimplantation genetic diagnosis

por Kumar, Akash, Ryan, Allison, Kitzman, Jacob O, Wemmer, Nina, Snyder, Matthew W, Sigurjonsson, Styrmir, Lee, Choli, Banjevic, Milena, Zarutskie, Paul W, Lewis, Alexandra P, Shendure, Jay, Rabinowitz, Matthew
Publicado 2015

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

por Kim, Hyeon-Jin, Yardımcı, Galip Gürkan, Bonora, Giancarlo, Ramani, Vijay, Liu, Jie, Qiu, Ruolan, Lee, Choli, Hesson, Jennifer, Ware, Carol B., Shendure, Jay, Duan, Zhijun, Noble, William Stafford
Publicado 2020

A time-resolved, multi-symbol molecular recorder via sequential genome editing

por Choi, Junhong, Chen, Wei, Minkina, Anna, Chardon, Florence M., Suiter, Chase C., Regalado, Samuel G., Domcke, Silvia, Hamazaki, Nobuhiko, Lee, Choli, Martin, Beth, Daza, Riza M., Shendure, Jay
Publicado 2022

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation

por Bonora, Giancarlo, Ramani, Vijay, Singh, Ritambhara, Fang, He, Jackson, Dana L., Srivatsan, Sanjay, Qiu, Ruolan, Lee, Choli, Trapnell, Cole, Shendure, Jay, Duan, Zhijun, Deng, Xinxian, Noble, William S., Disteche, Christine M.
Publicado 2021

Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes

por Ng, Sarah B., Turner, Emily H., Robertson, Peggy D., Flygare, Steven D., Bigham, Abigail W., Lee, Choli, Shaffer, Tristan, Wong, Michelle, Bhattacharjee, Arindam, Eichler, Evan E., Bamshad, Michael, Nickerson, Deborah A., Shendure, Jay
Publicado 2009

Exome sequencing identifies the cause of a Mendelian disorder

por Ng, Sarah B., Buckingham, Kati J., Lee, Choli, Bigham, Abigail W., Tabor, Holly K., Dent, Karin M., Huff, Chad D., Shannon, Paul T., Jabs, Ethylin Wang, Nickerson, Deborah A., Shendure, Jay, Bamshad, Michael J.
Publicado 2009

Massively parallel functional dissection of mammalian enhancers in vivo

por Patwardhan, Rupali P, Hiatt, Joseph B, Witten, Daniela M, Kim, Mee J, Smith, Robin P, May, Dalit, Lee, Choli, Andrie, Jennifer M, Lee, Su-In, Cooper, Gregory M, Ahituv, Nadav, Pennacchio, Len A, Shendure, Jay
Publicado 2012

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes

por Ma, Wenxiu, Ay, Ferhat, Lee, Choli, Gulsoy, Gunhan, Deng, Xinxian, Cook, Savannah, Hesson, Jennifer, Cavanaugh, Christopher, Ware, Carol B., Krumm, Anton, Shendure, Jay, Blau, C. Anthony, Disteche, Christine M., Noble, William S., Duan, ZhiJun
Publicado 2014

Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies

por Liu, Jie, Halloran, John T., Bilmes, Jeffrey A., Daza, Riza M., Lee, Choli, Mahen, Elisabeth M., Prunkard, Donna, Song, Chaozhong, Blau, Sibel, Dorschner, Michael O., Gadi, Vijayakrishna K., Shendure, Jay, Blau, C. Anthony, Noble, William S.
Publicado 2017

Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations

por O’Roak, Brian J., Deriziotis, Pelagia, Lee, Choli, Vives, Laura, Schwartz, Jerrod J., Girirajan, Santhosh, Karakoc, Emre, MacKenzie, Alexandra P., Ng, Sarah B., Baker, Carl, Rieder, Mark J., Nickerson, Deborah A., Bernier, Raphael, Fisher, Simon E., Shendure, Jay, Eichler, Evan E.
Publicado 2011

Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes

por Kumar, Akash, Boyle, Evan A, Tokita, Mari, Mikheev, Andrei M, Sanger, Michelle C, Girard, Emily, Silber, John R, Gonzalez-Cuyar, Luis F, Hiatt, Joseph B, Adey, Andrew, Lee, Choli, Kitzman, Jacob O, Born, Donald E, Silbergeld, Daniel L, Olson, James M, Rostomily, Robert C, Shendure, Jay
Publicado 2014

Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome

por Ng, Sarah B., Bigham, Abigail W., Buckingham, Kati J., Hannibal, Mark C., McMillin, Margaret, Gildersleeve, Heidi, Beck, Anita E., Tabor, Holly K., Cooper, Greg M., Mefford, Heather C., Lee, Choli, Turner, Emily H., Smith, Josh D., Rieder, Mark J., Yoshiura, Koh-ichiro, Matsumoto, Naomichi, Ohta, Tohru, Niikawa, Norio, Nickerson, Deborah A., Bamshad, Michael J., Shendure, Jay
Publicado 2010

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations

por O’Roak, Brian J., Vives, Laura, Girirajan, Santhosh, Karakoc, Emre, Krumm, Nik, Coe, Bradley P., Levy, Roie, Ko, Arthur, Lee, Choli, Smith, Joshua D., Turner, Emily H., Stanaway, Ian B., Vernot, Benjamin, Malig, Maika, Baker, Carl, Reilly, Beau, Akey, Joshua M., Borenstein, Elhanan, Rieder, Mark J., Nickerson, Deborah A., Bernier, Raphael, Shendure, Jay, Eichler, Evan E.
Publicado 2012

Whole-Genome Sequencing of Individuals from a Founder Population Identifies Candidate Genes for Asthma

por Campbell, Catarina D., Mohajeri, Kiana, Malig, Maika, Hormozdiari, Fereydoun, Nelson, Benjamin, Du, Gaixin, Patterson, Kristen M., Eng, Celeste, Torgerson, Dara G., Hu, Donglei, Herman, Catherine, Chong, Jessica X., Ko, Arthur, O'Roak, Brian J., Krumm, Niklas, Vives, Laura, Lee, Choli, Roth, Lindsey A., Rodriguez-Cintron, William, Rodriguez-Santana, Jose, Brigino-Buenaventura, Emerita, Davis, Adam, Meade, Kelley, LeNoir, Michael A., Thyne, Shannon, Jackson, Daniel J., Gern, James E., Lemanske, Robert F., Shendure, Jay, Abney, Mark, Burchard, Esteban G., Ober, Carole, Eichler, Evan E.
Publicado 2014