kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison

por Leimeister, Chris-Andre, Morgenstern, Burkhard
Publicado 2014

Phylogeny reconstruction based on the length distribution of k-mismatch common substrings

por Morgenstern, Burkhard, Schöbel, Svenja, Leimeister, Chris-André
Publicado 2017

Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points

por Leimeister, Chris-André, Dencker, Thomas, Morgenstern, Burkhard
Publicado 2019

Fast and accurate phylogeny reconstruction using filtered spaced-word matches

por Leimeister, Chris-André, Sohrabi-Jahromi, Salma, Morgenstern, Burkhard
Publicado 2017

Estimating evolutionary distances between genomic sequences from spaced-word matches

por Morgenstern, Burkhard, Zhu, Bingyao, Horwege, Sebastian, Leimeister, Chris André
Publicado 2015

Fast alignment-free sequence comparison using spaced-word frequencies

por Leimeister, Chris-Andre, Boden, Marcus, Horwege, Sebastian, Lindner, Sebastian, Morgenstern, Burkhard
Publicado 2014

rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison

por Hahn, Lars, Leimeister, Chris-André, Ounit, Rachid, Lonardi, Stefano, Morgenstern, Burkhard
Publicado 2016

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

por Lau, Anna-Katharina, Dörrer, Svenja, Leimeister, Chris-André, Bleidorn, Christoph, Morgenstern, Burkhard
Publicado 2019

Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences

por Leimeister, Chris-Andre, Schellhorn, Jendrik, Dörrer, Svenja, Gerth, Michael, Bleidorn, Christoph, Morgenstern, Burkhard
Publicado 2018

‘Multi-SpaM’: a maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees

por Dencker, Thomas, Leimeister, Chris-André, Gerth, Michael, Bleidorn, Christoph, Snir, Sagi, Morgenstern, Burkhard
Publicado 2019

Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches

por Horwege, Sebastian, Lindner, Sebastian, Boden, Marcus, Hatje, Klas, Kollmar, Martin, Leimeister, Chris-André, Morgenstern, Burkhard
Publicado 2014

Benchmarking of alignment-free sequence comparison methods

por Zielezinski, Andrzej, Girgis, Hani Z., Bernard, Guillaume, Leimeister, Chris-Andre, Tang, Kujin, Dencker, Thomas, Lau, Anna Katharina, Röhling, Sophie, Choi, Jae Jin, Waterman, Michael S., Comin, Matteo, Kim, Sung-Hou, Vinga, Susana, Almeida, Jonas S., Chan, Cheong Xin, James, Benjamin T., Sun, Fengzhu, Morgenstern, Burkhard, Karlowski, Wojciech M.
Publicado 2019