Consulting the Oracle of SARS-CoV-2 Infection

por Lemieux, Jacob E, Luban, Jeremy
Publicado 2021

Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection

por Jankowiak, Martin, Obermeyer, Fritz H., Lemieux, Jacob E.
Publicado 2022

Development of a SNP barcode to genotype Babesia microti infections

por Baniecki, Mary Lynn, Moon, Jade, Sani, Kian, Lemieux, Jacob E., Schaffner, Stephen F., Sabeti, Pardis C.
Publicado 2019

985. Pooled RNA Metagenomics to Enable Scalable, Unbiased Pathogen Detection and Surveillance

por Messer, Katelyn S, Adams, Gordon, Paull, Jillian S, Livny, Jonathan, Lemieux, Jacob, Park, Daniel J, Sabeti, Pardis C, Siddle, Katherine J
Publicado 2023

Development of Cas13a-based Assays for Neisseria gonorrhoeae Detection and Gyrase A Determination

por Allan-Blitz, Lao-Tzu, Shah, Palak, Adams, Gordon, Branda, John A., Klausner, Jeffrey D., Goldstein, Robert, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2023

Development of Cas13a-based assays for Neisseria gonorrhoeae detection and gyrase A determination

por Allan-Blitz, Lao-Tzu, Shah, Palak, Adams, Gordon, Branda, John A., Klausner, Jeffrey D., Goldstein, Robert, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2023

Babesia microti Variant With Multiple Resistance Mutations Detected in an Immunocompromised Patient Receiving Atovaquone Prophylaxis

por Holbrook, Nolan R, Klontz, Erik H, Adams, Gordon C, Schnittman, Samuel R, Issa, Nicolas C, Bond, Sheila A, Branda, John A, Lemieux, Jacob E
Publicado 2023

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

por López-Barragán, María J, Lemieux, Jacob, Quiñones, Mariam, Williamson, Kim C, Molina-Cruz, Alvaro, Cui, Kairong, Barillas-Mury, Carolina, Zhao, Keji, Su, Xin-zhuan
Publicado 2011

A53 Systematic application of metagenomics NGS to identify and sequence viral pathogens in infections of the central nervous system

por Piantadosi, Anne, Mukerji, Shibani, Ye, Simon, Lemieux, Jacob, Friemark, Lisa, Park, Daniel, Adams, Gordon, Leone, Michael, Goldberg, Marcia, Cho, Tracey, Rosenberg, Eric, Sabeti, Pardis
Publicado 2018

Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis

por Normandin, Erica, Solomon, Isaac H, Zamirpour, Siavash, Lemieux, Jacob, Freije, Catherine A, Mukerji, Shibani S, Tomkins-Tinch, Christopher, Park, Daniel, Sabeti, Pardis C, Piantadosi, Anne
Publicado 2020

Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation

por Lemieux, Jacob E, Kyes, Sue A, Otto, Thomas D, Feller, Avi I, Eastman, Richard T, Pinches, Robert A, Berriman, Matthew, Su, Xin-zhuan, Newbold, Chris I
Publicado 2013

Detection of the Omicron Variant Virus With the Abbott BinaxNow SARS-CoV-2 Rapid Antigen Assay

por Regan, James, Flynn, James P, Choudhary, Manish C, Uddin, Rockib, Lemieux, Jacob, Boucau, Julie, Bhattacharyya, Roby P, Barczak, Amy K, Li, Jonathan Z, Siedner, Mark J
Publicado 2022

New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

por Otto, Thomas D, Wilinski, Daniel, Assefa, Sammy, Keane, Thomas M, Sarry, Louis R, Böhme, Ulrike, Lemieux, Jacob, Barrell, Bart, Pain, Arnab, Berriman, Matthew, Newbold, Chris, Llinás, Manuel
Publicado 2010

Genome Wide Adaptations of Plasmodium falciparum in Response to Lumefantrine Selective Drug Pressure

por Mwai, Leah, Diriye, Abdi, Masseno, Victor, Muriithi, Steven, Feltwell, Theresa, Musyoki, Jennifer, Lemieux, Jacob, Feller, Avi, Mair, Gunnar R., Marsh, Kevin, Newbold, Chris, Nzila, Alexis, Carret, Céline K.
Publicado 2012

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

por Obermeyer, Fritz, Jankowiak, Martin, Barkas, Nikolaos, Schaffner, Stephen F., Pyle, Jesse D., Yurkovetskiy, Lonya, Bosso, Matteo, Park, Daniel J., Babadi, Mehrtash, MacInnis, Bronwyn L., Luban, Jeremy, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2022

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

por Obermeyer, Fritz, Jankowiak, Martin, Barkas, Nikolaos, Schaffner, Stephen F., Pyle, Jesse D., Yurkovetskiy, Leonid, Bosso, Matteo, Park, Daniel J., Babadi, Mehrtash, MacInnis, Bronwyn L., Luban, Jeremy, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2022

868. Prospective Pathogen Detection in Patients With Central Nervous System Inflammation Using Metagenomic Sequencing

por Piantadosi, Anne, Mukerji, Shibani, Ye, Simon, Leone, Michael, Freimark, Lisa, Lemieux, Jacob, Solomon, Isaac, Ahmed, Asim, Kanjilal, Sanjat, Goldstein, Robert, Ganesh, Vijay, Ostrem, Bridget, Thon, Jesse, Kinsella, Cormac, Adams, Gordon, Rosenberg, Eric, Goldberg, Marcia, Sabeti, Pardis, Cho, Tracey
Publicado 2018

Delayed and Attenuated Antibody Responses to Coronavirus Disease 2019 Vaccination With Poor Cross-Variant Neutralization in Solid-Organ Transplant Recipients—A Prospective Longitud...

por Liew, May Y, Mathews, Josh I, Li, Amy, Singh, Rohan, Jaramillo, Salvador A, Weiss, Zoe F, Bowman, Kathryn, Ankomah, Pierre O, Ghantous, Fadi, Lewis, Gregory D, Neuringer, Isabel, Bitar, Natasha, Lipiner, Taryn, Dighe, Anand S, Kotton, Camille N, Seaman, Michael S, Lemieux, Jacob E, Goldberg, Marcia B
Publicado 2023

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

por Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Publicado 2021

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

por Normandin, Erica, Holroyd, Kathryn B., Collens, Sarah I., Shaw, Bennett M., Siddle, Katherine J., Adams, Gordon, Rudy, Melissa, Solomon, Isaac H., Anahtar, Melis N., Lemieux, Jacob E., Trombetta, Bianca A., Kivisakk, Pia, Arnold, Steven E., Rapalino, Otto, Piantadosi, Anne L., Sen, Pritha, Rosenberg, Eric S., Branda, John, Sabeti, Pardis C., Mukerji, Shibani S.
Publicado 2021