Consulting the Oracle of SARS-CoV-2 Infection

por Lemieux, Jacob E, Luban, Jeremy
Publicado 2021

Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection

por Jankowiak, Martin, Obermeyer, Fritz H., Lemieux, Jacob E.
Publicado 2022

Development of a SNP barcode to genotype Babesia microti infections

por Baniecki, Mary Lynn, Moon, Jade, Sani, Kian, Lemieux, Jacob E., Schaffner, Stephen F., Sabeti, Pardis C.
Publicado 2019

Development of Cas13a-based Assays for Neisseria gonorrhoeae Detection and Gyrase A Determination

por Allan-Blitz, Lao-Tzu, Shah, Palak, Adams, Gordon, Branda, John A., Klausner, Jeffrey D., Goldstein, Robert, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2023

Development of Cas13a-based assays for Neisseria gonorrhoeae detection and gyrase A determination

por Allan-Blitz, Lao-Tzu, Shah, Palak, Adams, Gordon, Branda, John A., Klausner, Jeffrey D., Goldstein, Robert, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2023

Babesia microti Variant With Multiple Resistance Mutations Detected in an Immunocompromised Patient Receiving Atovaquone Prophylaxis

por Holbrook, Nolan R, Klontz, Erik H, Adams, Gordon C, Schnittman, Samuel R, Issa, Nicolas C, Bond, Sheila A, Branda, John A, Lemieux, Jacob E
Publicado 2023

Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation

por Lemieux, Jacob E, Kyes, Sue A, Otto, Thomas D, Feller, Avi I, Eastman, Richard T, Pinches, Robert A, Berriman, Matthew, Su, Xin-zhuan, Newbold, Chris I
Publicado 2013

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

por Obermeyer, Fritz, Jankowiak, Martin, Barkas, Nikolaos, Schaffner, Stephen F., Pyle, Jesse D., Yurkovetskiy, Lonya, Bosso, Matteo, Park, Daniel J., Babadi, Mehrtash, MacInnis, Bronwyn L., Luban, Jeremy, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2022

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness

por Obermeyer, Fritz, Jankowiak, Martin, Barkas, Nikolaos, Schaffner, Stephen F., Pyle, Jesse D., Yurkovetskiy, Leonid, Bosso, Matteo, Park, Daniel J., Babadi, Mehrtash, MacInnis, Bronwyn L., Luban, Jeremy, Sabeti, Pardis C., Lemieux, Jacob E.
Publicado 2022

Delayed and Attenuated Antibody Responses to Coronavirus Disease 2019 Vaccination With Poor Cross-Variant Neutralization in Solid-Organ Transplant Recipients—A Prospective Longitud...

por Liew, May Y, Mathews, Josh I, Li, Amy, Singh, Rohan, Jaramillo, Salvador A, Weiss, Zoe F, Bowman, Kathryn, Ankomah, Pierre O, Ghantous, Fadi, Lewis, Gregory D, Neuringer, Isabel, Bitar, Natasha, Lipiner, Taryn, Dighe, Anand S, Kotton, Camille N, Seaman, Michael S, Lemieux, Jacob E, Goldberg, Marcia B
Publicado 2023

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

por Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Publicado 2021

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

por Normandin, Erica, Holroyd, Kathryn B., Collens, Sarah I., Shaw, Bennett M., Siddle, Katherine J., Adams, Gordon, Rudy, Melissa, Solomon, Isaac H., Anahtar, Melis N., Lemieux, Jacob E., Trombetta, Bianca A., Kivisakk, Pia, Arnold, Steven E., Rapalino, Otto, Piantadosi, Anne L., Sen, Pritha, Rosenberg, Eric S., Branda, John, Sabeti, Pardis C., Mukerji, Shibani S.
Publicado 2021

Anamnestic humoral correlates of immunity across SARS-CoV-2 variants of concern

por McNamara, Ryan P., Maron, Jenny S., Boucau, Julie, Roy, Vicky, Webb, Nicholas E., Bertera, Harry L., Barczak, Amy K., Positives Study Staff, The, Franko, Nicholas, Logue, Jennifer K., Kemp, Megan, Li, Jonathan Z., Zhou, Ling, Hsieh, Ching-Lin, McLellan, Jason S., Siedner, Mark J., Seaman, Michael S., Lemieux, Jacob E., Chu, Helen Y., Alter, Galit
Publicado 2023

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant

por Yurkovetskiy, Leonid, Wang, Xue, Pascal, Kristen E., Tomkins-Tinch, Christopher, Nyalile, Thomas, Wang, Yetao, Baum, Alina, Diehl, William E., Dauphin, Ann, Carbone, Claudia, Veinotte, Kristen, Egri, Shawn B., Schaffner, Stephen F., Lemieux, Jacob E., Munro, James, Rafique, Ashique, Barve, Abhi, Sabeti, Pardis C., Kyratsous, Christos A., Dudkina, Natalya, Shen, Kuang, Luban, Jeremy
Publicado 2020

Duration of viral shedding and culture positivity with postvaccination SARS-CoV-2 delta variant infections

por Siedner, Mark J., Boucau, Julie, Gilbert, Rebecca F., Uddin, Rockib, Luu, Jonathan, Haneuse, Sebastien, Vyas, Tammy, Reynolds, Zahra, Iyer, Surabhi, Chamberlin, Grace C., Goldstein, Robert H., North, Crystal M., Sacks, Chana A., Regan, James, Flynn, James P., Choudhary, Manish C., Vyas, Jatin M., Barczak, Amy K., Lemieux, Jacob E., Li, Jonathan Z.
Publicado 2022

RSV Surge in the USA and Viral Lineages, 2022

por Adams, Gordon, Moreno, Gage K., Petros, Brittany A., Uddin, Rockib, Levine, Zoe, Kotzen, Ben, Messer, Katelyn, Dobbins, Sabrina T., DeRuff, Katherine C., Loreth, Christine, Brock-Fisher, Taylor, Schaffner, Stephen F., Chaluvadi, Sushma, Kanjilal, Sanjat, Luban, Jeremy, Ozonoff, Al, Park, Daniel, Turbett, Sarah, Siddle, Katie J., MacInnis, Bronwyn L., Sabeti, Pardis, Lemieux, Jacob E.
Publicado 2023

Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2

por Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Boehm, Chloe K., Petros, Brittany A., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron
Publicado 2020

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant

por Yurkovetskiy, Leonid, Wang, Xue, Pascal, Kristen E., Tomkins-Tinch, Christopher, Nyalile, Thomas P., Wang, Yetao, Baum, Alina, Diehl, William E., Dauphin, Ann, Carbone, Claudia, Veinotte, Kristen, Egri, Shawn B., Schaffner, Stephen F., Lemieux, Jacob E., Munro, James B., Rafique, Ashique, Barve, Abhi, Sabeti, Pardis C., Kyratsous, Christos A., Dudkina, Natalya V., Shen, Kuang, Luban, Jeremy
Publicado 2020

Whole genome sequencing of Borrelia burgdorferi isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence

por Lemieux, Jacob E., Huang, Weihua, Hill, Nathan, Cerar, Tjasa, Freimark, Lisa, Hernandez, Sergio, Luban, Matteo, Maraspin, Vera, Bogovic, Petra, Ogrinc, Katarina, Ruzic-Sabljic, Eva, Lapierre, Pascal, Lasek-Nesselquist, Erica, Singh, Navjot, Iyer, Radha, Liveris, Dionysios, Reed, Kurt D., Leong, John M., Branda, John A., Steere, Allen C., Wormser, Gary P., Strle, Franc, Sabeti, Pardis C., Schwartz, Ira, Strle, Klemen
Publicado 2023

SARS-CoV-2 virologic rebound with nirmatrelvir-ritonavir therapy

por Edelstein, Gregory E., Boucau, Julie, Uddin, Rockib, Marino, Caitlin, Liew, May Y., Barry, Mamadou, Choudhary, Manish C., Gilbert, Rebecca F., Reynolds, Zahra, Li, Yijia, Tien, Dessie, Sagar, Shruti, Vyas, Tammy D., Kawano, Yumeko, Sparks, Jeffrey A., Hammond, Sarah P., Wallace, Zachary, Vyas, Jatin M., Barczak, Amy K., Lemieux, Jacob E., Li, Jonathan Z., Siedner, Mark J.
Publicado 2023