Genome Sequence of Staphylococcus aureus Strain CA-347, a USA600 Methicillin-Resistant Isolate

por Stegger, Marc, Driebe, Elizabeth M., Roe, Chandler, Lemmer, Darrin, Bowers, Jolene R., Engelthaler, David M., Keim, Paul, Andersen, Paal S.
Publicado 2013

KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae

por Bowers, Jolene R., Lemmer, Darrin, Sahl, Jason W., Pearson, Talima, Driebe, Elizabeth M., Wojack, Bette, Saubolle, Michael A., Engelthaler, David M., Keim, Paul
Publicado 2016

Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences

por Walter, Katharine S., Colijn, Caroline, Cohen, Ted, Mathema, Barun, Liu, Qingyun, Bowers, Jolene, Engelthaler, David M., Narechania, Apurva, Lemmer, Darrin, Croda, Julio, Andrews, Jason R.
Publicado 2020

Isolation of Anti-Inflammatory and Epithelium Reinforcing Bacteroides and Parabacteroides Spp. from A Healthy Fecal Donor

por Hiippala, Kaisa, Kainulainen, Veera, Suutarinen, Maiju, Heini, Tuomas, Bowers, Jolene R., Jasso-Selles, Daniel, Lemmer, Darrin, Valentine, Michael, Barnes, Riley, Engelthaler, David M., Satokari, Reetta
Publicado 2020

Novel Odoribacter splanchnicus Strain and Its Outer Membrane Vesicles Exert Immunoregulatory Effects in vitro

por Hiippala, Kaisa, Barreto, Gonçalo, Burrello, Claudia, Diaz-Basabe, Angelica, Suutarinen, Maiju, Kainulainen, Veera, Bowers, Jolene R., Lemmer, Darrin, Engelthaler, David M., Eklund, Kari K., Facciotti, Federica, Satokari, Reetta
Publicado 2020

Methods for sequencing the pandemic: benefits of rapid or high-throughput processing

por Folkerts, Megan L., Lemmer, Darrin, Pfeiffer, Ashlyn, Vasquez, Danielle, French, Chris, Jones, Amber, Nguyen, Marjorie, Larsen, Brendan, Porter, W. Tanner, Sheridan, Krystal, Bowers, Jolene R., Engelthaler, David M.
Publicado 2022

Applying Genomic Epidemiology to Characterize a COVID-19 Outbreak in a Developmentally Disabled Adult Group Home Setting, Arizona

por Yaglom, Hayley D., Gebhardt, Marette, Pfeiffer, Ashlyn, Ormsby, Mary Ellen, Jasso-Selles, Daniel E., Lemmer, Darrin, Folkerts, Megan L., French, Chris, Maurer, Matthew, Bowers, Jolene R., Engelthaler, David M.
Publicado 2021

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic

por Bowers, Jolene R., Kitchel, Brandon, Driebe, Elizabeth M., MacCannell, Duncan R., Roe, Chandler, Lemmer, Darrin, de Man, Tom, Rasheed, J. Kamile, Engelthaler, David M., Keim, Paul, Limbago, Brandi M.
Publicado 2015

Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis

por Bowers, Jolene R., Driebe, Elizabeth M., Albrecht, Valerie, McDougal, Linda K., Granade, Mitchell, Roe, Chandler C., Lemmer, Darrin, Rasheed, J. Kamile, Engelthaler, David M., Keim, Paul, Limbago, Brandi M.
Publicado 2018

Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation

por Colman, Rebecca E., Mace, Aurélien, Seifert, Marva, Hetzel, Jonathan, Mshaiel, Haifa, Suresh, Anita, Lemmer, Darrin, Engelthaler, David M., Catanzaro, Donald G., Young, Amanda G., Denkinger, Claudia M., Rodwell, Timothy C.
Publicado 2019

Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study

por Colman, Rebecca E., Anderson, Julia, Lemmer, Darrin, Lehmkuhl, Erik, Georghiou, Sophia B., Heaton, Hannah, Wiggins, Kristin, Gillece, John D., Schupp, James M., Catanzaro, Donald G., Crudu, Valeriu, Cohen, Ted, Rodwell, Timothy C., Engelthaler, David M.
Publicado 2016

A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network

por Williamson, Charles H. D., Stone, Nathan E., Nunnally, Amalee E., Hornstra, Heidie M., Wagner, David M., Roe, Chandler C., Vazquez, Adam J., Nandurkar, Nivedita, Vinocur, Jacob, Terriquez, Joel, Gillece, John, Travis, Jason, Lemmer, Darrin, Keim, Paul, Sahl, Jason W.
Publicado 2019

Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona

por Bowers, Jolene R., Yaglom, Hayley D., Hepp, Crystal M., Pfeiffer, Ashlyn, Jasso-Selles, Daniel, Bratsch, Nicole, Nashio, J. T., Folkerts, Megan, Wilbur, Sara M., French, Chris, Lemmer, Darrin, Fitzpatrick, Kathryn, Huynh, Trung, Komatsu, Kenneth, McAuley, James B., Close, Ryan, Engelthaler, David M.
Publicado 2023

Rhizopus microsporus Infections Associated with Surgical Procedures, Argentina, 2006–2014

por Bowers, Jolene R., Monroy-Nieto, Juan, Gade, Lalitha, Travis, Jason, Refojo, Nicolás, Abrantes, Ruben, Santander, Jorge, French, Chris, Dignani, María Cecilia, Hevia, Alejandra Ines, Roe, Chandler C., Lemmer, Darrin, Lockhart, Shawn R., Chiller, Tom, Litvintseva, Anastasia P., Clara, Liliana, Engelthaler, David M.
Publicado 2020

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

por Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Publicado 2020

Whole-Genome Sequencing to Determine Origin of Multinational Outbreak of Sarocladium kiliense Bloodstream Infections

por Etienne, Kizee A., Roe, Chandler C., Smith, Rachel M., Vallabhaneni, Snigdha, Duarte, Carolina, Escandón, Patricia, Castañeda, Elizabeth, Gómez, Beatriz L., de Bedout, Catalina, López, Luisa F., Salas, Valentina, Hederra, Luz Maria, Fernández, Jorge, Pidal, Paola, Hormazabel, Juan Carlos, Otaíza-O’Ryan, Fernando, Vannberg, Fredrik O., Gillece, John, Lemmer, Darrin, Driebe, Elizabeth M., Engelthaler, David M., Litvintseva, Anastasia P.
Publicado 2016

Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role

por Bowers, Jolene R., Valentine, Michael, Harrison, Veronica, Fofanov, Viacheslav Y., Gillece, John, Delisle, Josie, Patton, Bethany, Schupp, James, Sheridan, Krystal, Lemmer, Darrin, Ostdiek, Scott, Bains, Harlori K., Heim, Jennifer, Sylvester, Tammy, Prasai, Siru, Kretschmer, Melissa, Fowle, Nicole, Komatsu, Kenneth, Brady, Shane, Robinson, Susan, Fitzpatrick, Kathryn, Ostovar, Gholamabbas Amin, Alsop, Eric, Hutchins, Elizabeth, Jensen, Kendall, Keim, Paul, Engelthaler, David M.
Publicado 2019

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

por Ladner, Jason T., Larsen, Brendan B., Bowers, Jolene R., Hepp, Crystal M., Bolyen, Evan, Folkerts, Megan, Sheridan, Krystal, Pfeiffer, Ashlyn, Yaglom, Hayley, Lemmer, Darrin, Sahl, Jason W., Kaelin, Emily A., Maqsood, Rabia, Bokulich, Nicholas A., Quirk, Grace, Watts, Thomas D., Komatsu, Kenneth K., Waddell, Victor, Lim, Efrem S., Caporaso, J. Gregory, Engelthaler, David M., Worobey, Michael, Keim, Paul
Publicado 2020

St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event

por Ridenour, Chase L., Cocking, Jill, Poidmore, Samuel, Erickson, Daryn, Brock, Breezy, Valentine, Michael, Roe, Chandler C., Young, Steven J., Henke, Jennifer A., Hung, Kim Y., Wittie, Jeremy, Stefanakos, Elene, Sumner, Chris, Ruedas, Martha, Raman, Vivek, Seaton, Nicole, Bendik, William, Hornstra O’Neill, Heidie M., Sheridan, Krystal, Centner, Heather, Lemmer, Darrin, Fofanov, Viacheslav, Smith, Kirk, Will, James, Townsend, John, Foster, Jeffrey T., Keim, Paul S., Engelthaler, David M., Hepp, Crystal M.
Publicado 2021