The discrepancy between chromatin factor location and effect

por Lenstra, Tineke L., Holstege, Frank C.P.
Publicado 2012

Optimized protocol for single-molecule RNA FISH to visualize gene expression in S. cerevisiae

por Patel, Heta P., Brouwer, Ineke, Lenstra, Tineke L.
Publicado 2021

Dynamic epistasis analysis reveals how chromatin remodeling regulates transcriptional bursting

por Brouwer, Ineke, Kerklingh, Emma, van Leeuwen, Fred, Lenstra, Tineke L.
Publicado 2023

Single-Molecule Fluorescence Imaging in Living Saccharomyces cerevisiae Cells

por Brouwer, Ineke, Patel, Heta Piyush, Meeussen, Joseph Victor Willem, Pomp, Wim, Lenstra, Tineke Laura
Publicado 2020

Following the tracks: How transcription factor binding dynamics control transcription

por de Jonge, Wim J., Patel, Heta P., Meeussen, Joseph V.W., Lenstra, Tineke L.
Publicado 2022

DNA supercoiling restricts the transcriptional bursting of neighboring eukaryotic genes

por Patel, Heta P., Coppola, Stefano, Pomp, Wim, Aiello, Umberto, Brouwer, Ineke, Libri, Domenico, Lenstra, Tineke L.
Publicado 2023

Quantifying how post-transcriptional noise and gene copy number variation bias transcriptional parameter inference from mRNA distributions

por Fu, Xiaoming, Patel, Heta P, Coppola, Stefano, Xu, Libin, Cao, Zhixing, Lenstra, Tineke L, Grima, Ramon
Publicado 2022

Transcription factor clusters enable target search but do not contribute to target gene activation

por Meeussen, Joseph V W, Pomp, Wim, Brouwer, Ineke, de Jonge, Wim J, Patel, Heta P, Lenstra, Tineke L
Publicado 2023

A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA

por García-Oliver, Encar, Pascual-García, Pau, García-Molinero, Varinia, Lenstra, Tineke L., Holstege, Frank C. P., Rodríguez-Navarro, Susana
Publicado 2013

Transcription-replication coordination revealed in single live cells

por Tsirkas, Ioannis, Dovrat, Daniel, Thangaraj, Manikandan, Brouwer, Ineke, Cohen, Amit, Paleiov, Zohar, Meijler, Michael M, Lenstra, Tineke, Aharoni, Amir
Publicado 2022

The Hda1 histone deacetylase limits divergent non‐coding transcription and restricts transcription initiation frequency

por Gowthaman, Uthra, Ivanov, Maxim, Schwarz, Isabel, Patel, Heta P, Müller, Niels A, García‐Pichardo, Desiré, Lenstra, Tineke L, Marquardt, Sebastian
Publicado 2021

A Barcode Screen for Epigenetic Regulators Reveals a Role for the NuB4/HAT-B Histone Acetyltransferase Complex in Histone Turnover

por Verzijlbergen, Kitty F., van Welsem, Tibor, Sie, Daoud, Lenstra, Tineke L., Turner, Daniel J., Holstege, Frank C. P., Kerkhoven, Ron M., van Leeuwen, Fred
Publicado 2011

The Role of Ctk1 Kinase in Termination of Small Non-Coding RNAs

por Lenstra, Tineke L., Tudek, Agnieszka, Clauder, Sandra, Xu, Zhenyu, Pachis, Spyridon T., van Leenen, Dik, Kemmeren, Patrick, Steinmetz, Lars M., Libri, Domenico, Holstege, Frank C. P.
Publicado 2013

Cell cycle population effects in perturbation studies

por O'Duibhir, Eoghan, Lijnzaad, Philip, Benschop, Joris J, Lenstra, Tineke L, van Leenen, Dik, Groot Koerkamp, Marian JA, Margaritis, Thanasis, Brok, Mariel O, Kemmeren, Patrick, Holstege, Frank CP
Publicado 2014

Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms

por Stulemeijer, Iris JE, Pike, Brietta L, Faber, Alex W, Verzijlbergen, Kitty F, van Welsem, Tibor, Frederiks, Floor, Lenstra, Tineke L, Holstege, Frank CP, Gasser, Susan M, van Leeuwen, Fred
Publicado 2011

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics

por Sexton, Tom, Platania, Angeliki, Erb, Cathie, Barbieri, Mariano, Molcrette, Bastien, Grandgirard, Erwan, de Kort, Marit, Meabum, Karen, Taylor, Tiegh, Shchuka, Virlana, Kocanova, Silvia, Oliveira, Guilherme, Mitchell, Jennifer, Soutoglou, Evi, Lenstra, Tineke, Molina, Nacho, Papantonis, Argyris, Bystricky, Keratin
Publicado 2023

Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t(6)A modification of tRNAs

por Daugeron, Marie-Claire, Lenstra, Tineke L., Frizzarin, Martina, El Yacoubi, Basma, Liu, Xipeng, Baudin-Baillieu, Agnès, Lijnzaad, Philip, Decourty, Laurence, Saveanu, Cosmin, Jacquier, Alain, Holstege, Frank C. P., de Crécy-Lagard, Valérie, van Tilbeurgh, Herman, Libri, Domenico
Publicado 2011

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions

por Sameith, Katrin, Amini, Saman, Groot Koerkamp, Marian J. A., van Leenen, Dik, Brok, Mariel, Brabers, Nathalie, Lijnzaad, Philip, van Hooff, Sander R., Benschop, Joris J., Lenstra, Tineke L., Apweiler, Eva, van Wageningen, Sake, Snel, Berend, Holstege, Frank C. P., Kemmeren, Patrick
Publicado 2015

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics

por Platania, Angeliki, Erb, Cathie, Barbieri, Mariano, Molcrette, Bastien, Grandgirard, Erwan, de Kort, Marit AC, Meaburn, Karen, Taylor, Tiegh, Shchuka, Virlana M, Kocanova, Silvia, Oliveira, Guilherme Monteiro, Mitchell, Jennifer A, Soutoglou, Evi, Lenstra, Tineke L, Molina, Nacho, Papantonis, Argyris, Bystricky, Kerstin, Sexton, Tom
Publicado 2023

Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus

por Taylor, Tiegh, Sikorska, Natalia, Shchuka, Virlana M., Chahar, Sanjay, Ji, Chenfan, Macpherson, Neil N., Moorthy, Sakthi D., de Kort, Marit A.C., Mullany, Shanelle, Khader, Nawrah, Gillespie, Zoe E., Langroudi, Lida, Tobias, Ian C., Lenstra, Tineke L., Mitchell, Jennifer A., Sexton, Tom
Publicado 2022