TiPs: a database of therapeutic targets in pathogens and associated tools

por Lepore, Rosalba, Tramontano, Anna, Via, Allegra
Publicado 2013

LoopIng: a template-based tool for predicting the structure of protein loops

por Messih, Mario Abdel, Lepore, Rosalba, Tramontano, Anna
Publicado 2015

Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies

por Messih, Mario Abdel, Lepore, Rosalba, Marcatili, Paolo, Tramontano, Anna
Publicado 2014

PepComposer: computational design of peptides binding to a given protein surface

por Obarska-Kosinska, Agnieszka, Iacoangeli, Alfredo, Lepore, Rosalba, Tramontano, Anna
Publicado 2016

Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic β-CoVs

por Pontes, Camila, Ruiz-Serra, Victoria, Lepore, Rosalba, Valencia, Alfonso
Publicado 2021

Quantitative Description of Surface Complementarity of Antibody-Antigen Interfaces

por Di Rienzo, Lorenzo, Milanetti, Edoardo, Ruocco, Giancarlo, Lepore, Rosalba
Publicado 2021

PIGSPro: prediction of immunoGlobulin structures v2

por Lepore, Rosalba, Olimpieri, Pier P., Messih, Mario A., Tramontano, Anna
Publicado 2017

Superposition-free comparison and clustering of antibody binding sites: implications for the prediction of the nature of their antigen

por Di Rienzo, Lorenzo, Milanetti, Edoardo, Lepore, Rosalba, Olimpieri, Pier Paolo, Tramontano, Anna
Publicado 2017

Artemether resistance in vitro is linked to mutations in PfATP6 that also interact with mutations in PfMDR1 in travellers returning with Plasmodium falciparum infections

por Pillai, Dylan R, Lau, Rachel, Khairnar, Krishna, Lepore, Rosalba, Via, Allegra, Staines, Henry M, Krishna, Sanjeev
Publicado 2012

DGLinker: flexible knowledge-graph prediction of disease–gene associations

por Hu, Jiajing, Lepore, Rosalba, Dobson, Richard J B, Al-Chalabi, Ammar, M. Bean, Daniel, Iacoangeli, Alfredo
Publicado 2021

Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling

por Lorrai, Riccardo, Gandolfi, Francesco, Boccaccini, Alessandra, Ruta, Veronica, Possenti, Marco, Tramontano, Anna, Costantino, Paolo, Lepore, Rosalba, Vittorioso, Paola
Publicado 2018

Insights on protein thermal stability: a graph representation of molecular interactions

por Miotto, Mattia, Olimpieri, Pier Paolo, Di Rienzo, Lorenzo, Ambrosetti, Francesco, Corsi, Pietro, Lepore, Rosalba, Tartaglia, Gian Gaetano, Milanetti, Edoardo
Publicado 2019

Analysis of electronic health records from three distinct and large populations reveals high prevalence and biases in the co-administration of drugs known to interact

por Sánchez-Valle, Jon, Correia, Rion Brattig, Camacho-Artacho, Marta, Lepore, Rosalba, Mattos, Mauro M., Rocha, Luis M., Valencia, Alfonso
Publicado 2023

SWISS-MODEL: homology modelling of protein structures and complexes

por Waterhouse, Andrew, Bertoni, Martino, Bienert, Stefan, Studer, Gabriel, Tauriello, Gerardo, Gumienny, Rafal, Heer, Florian T, de Beer, Tjaart A P, Rempfer, Christine, Bordoli, Lorenza, Lepore, Rosalba, Schwede, Torsten
Publicado 2018

Previous SARS-CoV-2 Infection Increases B.1.1.7 Cross-Neutralization by Vaccinated Individuals

por Trinité, Benjamin, Pradenas, Edwards, Marfil, Silvia, Rovirosa, Carla, Urrea, Víctor, Tarrés-Freixas, Ferran, Ortiz, Raquel, Rodon, Jordi, Vergara-Alert, Júlia, Segalés, Joaquim, Guallar, Victor, Lepore, Rosalba, Izquierdo-Useros, Nuria, Trujillo, Glòria, Trapé, Jaume, González-Fernández, Carolina, Flor, Antonia, Pérez-Vidal, Rafel, Toledo, Ruth, Chamorro, Anna, Paredes, Roger, Blanco, Ignacio, Grau, Eulàlia, Massanella, Marta, Carrillo, Jorge, Clotet, Bonaventura, Blanco, Julià
Publicado 2021

Heterogeneous Infectivity and Pathogenesis of SARS-CoV-2 Variants Beta, Delta and Omicron in Transgenic K18-hACE2 and Wildtype Mice

por Tarrés-Freixas, Ferran, Trinité, Benjamin, Pons-Grífols, Anna, Romero-Durana, Miguel, Riveira-Muñoz, Eva, Ávila-Nieto, Carlos, Pérez, Mónica, Garcia-Vidal, Edurne, Perez-Zsolt, Daniel, Muñoz-Basagoiti, Jordana, Raïch-Regué, Dàlia, Izquierdo-Useros, Nuria, Andrés, Cristina, Antón, Andrés, Pumarola, Tomàs, Blanco, Ignacio, Noguera-Julián, Marc, Guallar, Victor, Lepore, Rosalba, Valencia, Alfonso, Urrea, Victor, Vergara-Alert, Júlia, Clotet, Bonaventura, Ballana, Ester, Carrillo, Jorge, Segalés, Joaquim, Blanco, Julià
Publicado 2022

Epitope-engineered human hematopoietic stem cells are shielded from CD123-targeted immunotherapy

por Marone, Romina, Landmann, Emmanuelle, Devaux, Anna, Lepore, Rosalba, Seyres, Denis, Zuin, Jessica, Burgold, Thomas, Engdahl, Corinne, Capoferri, Giuseppina, Dell’Aglio, Alessandro, Larrue, Clément, Simonetta, Federico, Rositzka, Julia, Rhiel, Manuel, Andrieux, Geoffroy, Gallagher, Danielle N., Schröder, Markus S., Wiederkehr, Amélie, Sinopoli, Alessandro, Do Sacramento, Valentin, Haydn, Anna, Garcia-Prat, Laura, Divsalar, Christopher, Camus, Anna, Xu, Liwen, Bordoli, Lorenza, Schwede, Torsten, Porteus, Matthew, Tamburini, Jérôme, Corn, Jacob E., Cathomen, Toni, Cornu, Tatjana I., Urlinger, Stefanie, Jeker, Lukas T.
Publicado 2023

Target highlights in CASP13: Experimental target structures through the eyes of their authors

por Lepore, Rosalba, Kryshtafovych, Andriy, Alahuhta, Markus, Veraszto, Harshul A., Bomble, Yannick J., Bufton, Joshua C., Bullock, Alex N., Caba, Cody, Cao, Hongnan, Davies, Owen R., Desfosses, Ambroise, Dunne, Matthew, Fidelis, Krzysztof, Goulding, Celia W., Gurusaran, Manickam, Gutsche, Irina, Harding, Christopher J., Hartmann, Marcus D., Hayes, Christopher S., Joachimiak, Andrzej, Leiman, Petr G., Loppnau, Peter, Lovering, Andrew L., Lunin, Vladimir V., Michalska, Karolina, Mir‐Sanchis, Ignacio, Mitra, AK, Moult, John, Phillips Jr, George N., Pinkas, Daniel M., Rice, Phoebe A., Tong, Yufeng, Topf, Maya, Walton, Jonathan D., Schwede, Torsten
Publicado 2019

Target highlights in CASP14: Analysis of models by structure providers

por Alexander, Leila T., Lepore, Rosalba, Kryshtafovych, Andriy, Adamopoulos, Athanassios, Alahuhta, Markus, Arvin, Ann M., Bomble, Yannick J., Böttcher, Bettina, Breyton, Cécile, Chiarini, Valerio, Chinnam, Naga babu, Chiu, Wah, Fidelis, Krzysztof, Grinter, Rhys, Gupta, Gagan D., Hartmann, Marcus D., Hayes, Christopher S., Heidebrecht, Tatjana, Ilari, Andrea, Joachimiak, Andrzej, Kim, Youngchang, Linares, Romain, Lovering, Andrew L., Lunin, Vladimir V., Lupas, Andrei N., Makbul, Cihan, Michalska, Karolina, Moult, John, Mukherjee, Prasun K., Nutt, William (Sam), Oliver, Stefan L., Perrakis, Anastassis, Stols, Lucy, Tainer, John A., Topf, Maya, Tsutakawa, Susan E., Valdivia‐Delgado, Mauricio, Schwede, Torsten
Publicado 2021

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

por Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Publicado 2016