Don’t dismiss logistic regression: the case for sensible extraction of interactions in the era of machine learning

por Levy, Joshua J., O’Malley, A. James
Publicado 2020

PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

por Gordon, Sean P., Levy, Joshua J., Vogel, John P.
Publicado 2019

GRANDPA: GeneRAtive network sampling using degree and property augmentation applied to the analysis of partially confidential healthcare networks

por Bobak, Carly A., Zhao, Yifan, Levy, Joshua J., O’Malley, A. James
Publicado 2023

PathFlowAI: A High-Throughput Workflow for Preprocessing, Deep Learning and Interpretation in Digital Pathology

por Levy, Joshua J., Salas, Lucas A., Christensen, Brock C., Sriharan, Aravindhan, Vaickus, Louis J.
Publicado 2020

HiTAIC: hierarchical tumor artificial intelligence classifier traces tissue of origin and tumor type in primary and metastasized tumors using DNA methylation

por Zhang, Ze, Lu, Yunrui, Vosoughi, Soroush, Levy, Joshua J, Christensen, Brock C, Salas, Lucas A
Publicado 2023

MethylNet: an automated and modular deep learning approach for DNA methylation analysis

por Levy, Joshua J., Titus, Alexander J., Petersen, Curtis L., Chen, Youdinghuan, Salas, Lucas A., Christensen, Brock C.
Publicado 2020

Applications of artificial intelligence in orthopaedic surgery

por Farhadi, Faraz, Barnes, Matthew R., Sugito, Harun R., Sin, Jessica M., Henderson, Eric R., Levy, Joshua J.
Publicado 2022

Machine Learning Approaches for Hospital Acquired Pressure Injuries: A Retrospective Study of Electronic Medical Records

por Levy, Joshua J., Lima, Jorge F., Miller, Megan W., Freed, Gary L., O'Malley, A. James, Emeny, Rebecca T.
Publicado 2022

Paired-agent imaging as a rapid en face margin screening method in Mohs micrographic surgery

por Torres, Veronica C., Hodge, Sassan, Levy, Joshua J., Vaickus, Louis J., Chen, Eunice Y., LeBouef, Matthew, Samkoe, Kimberley S.
Publicado 2023

Using Satellite Images and Deep Learning to Identify Associations Between County-Level Mortality and Residential Neighborhood Features Proximal to Schools: A Cross-Sectional Study

por Levy, Joshua J., Lebeaux, Rebecca M., Hoen, Anne G., Christensen, Brock C., Vaickus, Louis J., MacKenzie, Todd A.
Publicado 2021

DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker

por Azizgolshani, Nasim, Petersen, Curtis L., Chen, Youdinghuan, Levy, Joshua J., Salas, Lucas A., Perreard, Laurent, Nguyen, Lananh N., Christensen, Brock C.
Publicado 2021

Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication

por Azher, Zarif L., Suvarna, Anish, Chen, Ji-Qing, Zhang, Ze, Christensen, Brock C., Salas, Lucas A., Vaickus, Louis J., Levy, Joshua J.
Publicado 2023

A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies

por Levy, Joshua J., Azizgolshani, Nasim, Andersen, Michael J., Suriawinata, Arief, Liu, Xiaoying, Lisovsky, Mikhail, Ren, Bing, Bobak, Carly A., Christensen, Brock C., Vaickus, Louis J.
Publicado 2020

MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks

por Levy, Joshua J., Chen, Youdinghuan, Azizgolshani, Nasim, Petersen, Curtis L., Titus, Alexander J., Moen, Erika L., Vaickus, Louis J., Salas, Lucas A., Christensen, Brock C.
Publicado 2021

Mixed Effects Machine Learning Models for Colon Cancer Metastasis Prediction using Spatially Localized Immuno-Oncology Markers

por Levy, Joshua J., Bobak, Carly A., Nasir-Moin, Mustafa, Veziroglu, Eren M., Palisoul, Scott M., Barney, Rachael E., Salas, Lucas A., Christensen, Brock C., Tsongalis, Gregory J., Vaickus, Louis J.
Publicado 2022

Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study

por Fatemi, Michael, Feng, Eric, Sharma, Cyril, Azher, Zarif, Goel, Tarushii, Ramwala, Ojas, Palisoul, Scott M., Barney, Rachael E., Perreard, Laurent, Kolling, Fred W., Salas, Lucas A., Christensen, Brock C., Tsongalis, Gregory J., Vaickus, Louis J., Levy, Joshua J.
Publicado 2023

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

por Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Publicado 2020