Genomic analysis of emerging pathogens: methods, application and future trends

por Li, Lucy M, Grassly, Nicholas C, Fraser, Christophe
Publicado 2014

Quantifying Transmission Heterogeneity Using Both Pathogen Phylogenies and Incidence Time Series

por Li, Lucy M., Grassly, Nicholas C., Fraser, Christophe
Publicado 2017

The impact of the COVID-19 preventive measures on influenza transmission: molecular and epidemiological evidence

por Tran, Leon King, Huang, Dai-Wei, Li, Nien-Kung, Li, Lucy M., Palacios, Julia A., Chang, Hsiao-Han
Publicado 2022

Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay

por Batson, Joshua, Dudas, Gytis, Haas-Stapleton, Eric, Kistler, Amy L, Li, Lucy M, Logan, Phoenix, Ratnasiri, Kalani, Retallack, Hanna
Publicado 2021

Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19

por Shah, Sachin J., Barish, Peter N., Prasad, Priya A., Kistler, Amy, Neff, Norma, Kamm, Jack, Li, Lucy M., Chiu, Charles Y., Babik, Jennifer M., Fang, Margaret C., Kangelaris, Kirsten Neudoerffer, Langelier, Charles
Publicado 2020

Sentinel Case of Candida auris in the Western United States Following Prolonged Occult Colonization in a Returned Traveler from India

por Woodworth, Michael H., Dynerman, David, Crawford, Emily D., Doernberg, Sarah B., Ramirez-Avila, Lynn, Serpa, Paula Hayakawa, Nichols, Amy, Li, Lucy M., Lyden, Amy, Tato, Cristina M., Miller, Steve, Derisi, Joseph L., Langelier, Charles
Publicado 2019

Bergeyella cardium: Clinical Characteristics and Draft Genome of an Emerging Pathogen in Native and Prosthetic Valve Endocarditis

por Mulliken, Jennifer S, Langelier, Charles, Budak, Jehan Z, Miller, Steve, Dynerman, David, Hao, Samantha, Li, Lucy M, Crawford, Emily, Lyden, Amy, Woodworth, Michael H, DeRisi, Joseph L, Desmond, Edward, Browne, Christina, Luu, Araceli, Grandis, Donald J, Grossman, William, Deuse, Tobias, Melcher, Gregory P
Publicado 2019

Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2021

Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing

por Crawford, Emily, Kamm, Jack, Miller, Steve, Li, Lucy M, Caldera, Saharai, Lyden, Amy, Yokoe, Deborah, Nichols, Amy, Tran, Nam K, Barnard, Sarah E, Conner, Peter M, Nambiar, Ashok, Zinter, Matt S, Moayeri, Morvarid, Serpa, Paula Hayakawa, Prince, Brian C, Quan, Jenai, Sit, Rene, Tan, Michelle, Phelps, Maira, Derisi, Joseph L, Tato, Cristina M, Langelier, Charles
Publicado 2020

Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2

por Mick, Eran, Kamm, Jack, Pisco, Angela Oliveira, Ratnasiri, Kalani, Babik, Jennifer M., Calfee, Carolyn S., Castañeda, Gloria, DeRisi, Joseph L., Detweiler, Angela M., Hao, Samantha, Kangelaris, Kirsten N., Kumar, G. Renuka, Li, Lucy M., Mann, Sabrina A., Neff, Norma, Prasad, Priya A., Serpa, Paula Hayakawa, Shah, Sachin J., Spottiswoode, Natasha, Tan, Michelle, Christenson, Stephanie A., Kistler, Amy, Langelier, Charles
Publicado 2020

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Smith, Christiana, Abuogi, Lisa, Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2022

Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses

por Mick, Eran, Kamm, Jack, Pisco, Angela Oliveira, Ratnasiri, Kalani, Babik, Jennifer M., Castañeda, Gloria, DeRisi, Joseph L., Detweiler, Angela M., Hao, Samantha L., Kangelaris, Kirsten N., Kumar, G. Renuka, Li, Lucy M., Mann, Sabrina A., Neff, Norma, Prasad, Priya A., Serpa, Paula Hayakawa, Shah, Sachin J., Spottiswoode, Natasha, Tan, Michelle, Calfee, Carolyn S., Christenson, Stephanie A., Kistler, Amy, Langelier, Charles
Publicado 2020

Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens

por Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M., Mayday, Madeline Y., Sajib, M. S. I., Li, Lucy M., Langelier, Charles, Rahman, Hafizur, Crawford, Emily D., Tato, Cristina M., Islam, Maksuda, Juan, Yun-Fang, de Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, De Carvalho, Tiago Rodrigues, Wilson, Michael R., Saha, Samir K., DeRisi, Joseph L.
Publicado 2019

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco

por Peng, James, Mann, Sabrina A, Mitchell, Anthea M, Liu, Jamin, Laurie, Matthew T., Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M., McGeever, Aaron, Chow, Eric D., Team, IDseq, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Publicado 2021

Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a...

por Peng, James, Liu, Jamin, Mann, Sabrina A, Mitchell, Anthea M, Laurie, Matthew T, Sunshine, Sara, Pilarowski, Genay, Ayscue, Patrick, Kistler, Amy, Vanaerschot, Manu, Li, Lucy M, McGeever, Aaron, Chow, Eric D, Marquez, Carina, Nakamura, Robert, Rubio, Luis, Chamie, Gabriel, Jones, Diane, Jacobo, Jon, Rojas, Susana, Rojas, Susy, Tulier-Laiwa, Valerie, Black, Douglas, Martinez, Jackie, Naso, Jamie, Schwab, Joshua, Petersen, Maya, Havlir, Diane, DeRisi, Joseph
Publicado 2021

Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19

por Shah, Sachin J., Barish, Peter N., Prasad, Priya A., Kistler, Amy, Neff, Norma, Kamm, Jack, Li, Lucy M., Chiu, Charles Y., Babik, Jennifer M., Fang, Margaret C., Abe-Jones, Yumiko, Alipanah, Narges, Alvarez, Francisco N., Botvinnik, Olga Borisovna, Castaneda, Gloria, Dadasovich, Rand M., Davis, Jennifer, Deng, Xianding, DeRisi, Joseph L., Detweiler, Angela M., Federman, Scot, Haliburton, John, Hao, Samantha, Kerkhoff, Andrew D., Kumar, G. Renuka, Malcolm, Katherine B., Mann, Sabrina A., Martinez, Sandra, Mary, Rupa K., Mick, Eran, Mwakibete, Lusajo, Najafi, Nader, Peluso, Michael J., Phelps, Maira, Pisco, Angela Oliveira, Ratnasiri, Kalani, Rubio, Luis A., Sellas, Anna, Sherwood, Kyla D., Sheu, Jonathan, Spottiswoode, Natasha, Tan, Michelle, Yu, Guixia, Kangelaris, Kirsten Neudoerffer, Langelier, Charles
Publicado 2020

Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries

por Perier, Celine, Nasinghe, Emmanuel, Charles, Isabelle, Ssetaba, Leoson Junior, Ahyong, Vida, Bangs, Derek, Beatty, P. Robert, Czudnochowski, Nadine, Diallo, Amy, Dugan, Eli, Fabius, Jacqueline M., Fong Baker, Hildy, Gardner, Jackson, Isaacs, Stephen, Joanah, Birungi, Kalantar, Katrina, Kateete, David, Knight, Matt, Krasilnikov, Maria, Krogan, Nevan J., Langelier, Chaz, Lee, Eric, Li, Lucy M., Licht, Daniel, Lien, Katie, Lyons, Zilose, Mboowa, Gerald, Mwebaza, Ivan, Mwesigwa, Savannah, Nalwadda, Geraldine, Nichols, Robert, Penaranda, Maria Elena, Petnic, Sarah, Phelps, Maira, Popper, Stephen J., Rape, Michael, Reingold, Arthur, Robbins, Richard, Rosenberg, Oren S., Savage, David F., Schildhauer, Samuel, Settles, Matthew L., Sserwadda, Ivan, Stanley, Sarah, Tato, Cristina M., Tsitsiklis, Alexandra, Van Dis, Erik, Vanaerschot, Manu, Vinden, Joanna, Cox, Jeffery S., Joloba, Moses L., Schaletzky, Julia
Publicado 2022