ADEPT, a dynamic next generation sequencing data error-detection program with trimming

por Feng, Shihai, Lo, Chien-Chi, Li, Po-E, Chain, Patrick S. G.
Publicado 2016

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures

por Freitas, Tracey Allen K., Li, Po-E, Scholz, Matthew B., Chain, Patrick S. G.
Publicado 2015

Under-detection of endospore-forming Firmicutes in metagenomic data

por Filippidou, Sevasti, Junier, Thomas, Wunderlin, Tina, Lo, Chien-Chi, Li, Po-E, Chain, Patrick S., Junier, Pilar
Publicado 2015

Genome Sequence of a Chromium-Reducing Strain, Bacillus cereus S612

por Wang, Dongping, Boukhalfa, Hakim, Ware, Doug S., Reimus, Paul W., Daligault, Hajnalka E., Gleasner, Cheryl D., Johnson, Shannon L., Li, Po-E
Publicado 2015

Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat

por Wang, Dongping, Han, Cliff S., Dichosa, Armand E. K., Gleasner, Cheryl D., Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Li, Po-E, Pierson, Elizabeth A., Pierson, Leland S.
Publicado 2013

Draft Genome Sequence of Enterobacter cloacae Strain S611

por Wang, Dongping, Han, Cliff S., Dichosa, Armand E. K., Gleasner, Cheryl D., Johnson, Shannon L., Daligault, Hajnalka E., Davenport, Karen W., Li, Po-E, Pierson, Elizabeth A., Pierson, Leland S.
Publicado 2014

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

por Filippidou, Sevasti, Wunderlin, Tina, Junier, Thomas, Jeanneret, Nicole, Johnson, Shannon, McMurry, Kim, Gleasner, Cheryl D., Lo, Chien-Chi, Li, Po-E, Vuyisich, Momchilo, Chain, Patrick S., Junier, Pilar
Publicado 2015

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

por Lo, Chien-Chi, Shakya, Migun, Connor, Ryan, Davenport, Karen, Flynn, Mark, Gutiérrez, Adán Myers y, Hu, Bin, Li, Po-E, Jackson, Elais Player, Xu, Yan, Chain, Patrick S G
Publicado 2022

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

por Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J., Davenport, Karen W., Bishop-Lilly, Kimberly A., Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P., Chain, Patrick S.G.
Publicado 2017

A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays

por Li, Po-E, Myers y Gutiérrez, Adán, Davenport, Karen, Flynn, Mark, Hu, Bin, Lo, Chien-Chi, Player Jackson, Elais, Shakya, Migun, Xu, Yan, Gans, Jason D, Chain, Patrick S G
Publicado 2020

Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)

por Xie, Gary, Ramirez, Maria S., Marshall, Steven H., Hujer, Kristine M., Lo, Chien-Chi, Johnson, Shannon, Li, Po-E, Davenport, Karen, Endimiani, Andrea, Bonomo, Robert A., Tolmasky, Marcelo E., Chain, Patrick S. G.
Publicado 2013

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir

por Filippidou, Sevasti, Jaussi, Marion, Junier, Thomas, Wunderlin, Tina, Jeanneret, Nicole, Regenspurg, Simona, Li, Po-E, Lo, Chien-Chi, Johnson, Shannon, McMurry, Kim, Gleasner, Cheryl D., Vuyisich, Momchilo, Chain, Patrick S., Junier, Pilar
Publicado 2015

Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods

por Bartlow, Andrew W., Stromberg, Zachary R., Gleasner, Cheryl D., Hu, Bin, Davenport, Karen W., Jakhar, Shailja, Li, Po-E, Vosburg, Molly, Garimella, Madhavi, Chain, Patrick S. G., Erkkila, Tracy H., Fair, Jeanne M., Mukundan, Harshini
Publicado 2022

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

por Davenport, Karen W., Daligault, Hajnalka E., Minogue, Timothy D., Bruce, David C., Chain, Patrick S. G., Coyne, Susan R., Jaissle, James G., Koroleva, Galina I., Ladner, Jason T., Li, Po-E, Palacios, Gustavo F., Scholz, Matthew B., Teshima, Hazuki, Johnson, Shannon L.
Publicado 2014

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets

por Dichosa, Armand E. K., Davenport, Karen W., Li, Po-E, Ahmed, Sanaa A., Daligault, Hajnalka, Gleasner, Cheryl D., Kunde, Yuliya, McMurry, Kim, Lo, Chien-Chi, Reitenga, Krista G., Daughton, Ashlynn R., Shen, Xiaohong, Frietze, Seth, Wang, Dongping, Johnson, Shannon L., Drautz-Moses, Daniela I., Schuster, Stephan, Chain, Patrick S., Han, Cliff
Publicado 2015

Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

por Johnson, Shannon L., Bishop-Lilly, Kimberly A., Ladner, Jason T., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Koroleva, Galina I., Bruce, David C., Coyne, Susan R., Broomall, Stacey M., Li, Po-E, Teshima, Hazuki, Gibbons, Henry S., Palacios, Gustavo F., Rosenzweig, C. Nicole, Redden, Cassie L., Xu, Yan, Minogue, Timothy D., Chain, Patrick S.
Publicado 2015

Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance

por Connor, Ryan, Yarmosh, David A., Maier, Wolfgang, Shakya, Migun, Martin, Ross, Bradford, Rebecca, Brister, J. Rodney, Chain, Patrick SG, Copeland, Courtney A., di Iulio, Julia, Hu, Bin, Ebert, Philip, Gunti, Jonathan, Jin, Yumi, Katz, Kenneth S., Kochergin, Andrey, LaRosa, Tré, Li, Jiani, Li, Po-E, Lo, Chien-Chi, Rashid, Sujatha, Maiorova, Evguenia S., Xiao, Chunlin, Zalunin, Vadim, Pruitt, Kim D.
Publicado 2022

The Coronavirus Standards Working Group’s roadmap for improved population testing

por Mercer, Tim, Almond, Neil, Crone, Michael A., Chain, Patrick S. G., Deshpande, Alina, Eveleigh, Deepa, Freemont, Paul, Fuchs, Sebastien, Garlick, Russell, Huggett, Jim, Kammel, Martin, Li, Po-E, Milavec, Mojca, Marlowe, Elizabeth M., O’Sullivan, Denise M., Page, Mark, Pestano, Gary A., Suliman, Sara, Simen, Birgitte, Sninsky, John J., Sopchak, Lynne, Tato, Cristina M., Vallone, Peter M., Vandesompele, Jo, White, Thomas J., Zeichhardt, Heinz, Salit, Marc
Publicado 2022

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale

por Hu, Bin, Canon, Shane, Eloe-Fadrosh, Emiley A., Anubhav, Babinski, Michal, Corilo, Yuri, Davenport, Karen, Duncan, William D., Fagnan, Kjiersten, Flynn, Mark, Foster, Brian, Hays, David, Huntemann, Marcel, Jackson, Elais K. Player, Kelliher, Julia, Li, Po-E., Lo, Chien-Chi, Mans, Douglas, McCue, Lee Ann, Mouncey, Nigel, Mungall, Christopher J., Piehowski, Paul D., Purvine, Samuel O., Smith, Montana, Varghese, Neha Jacob, Winston, Donald, Xu, Yan, Chain, Patrick S. G.
Publicado 2022

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

por Johnson, Shannon L., Bishop-Lilly, Kimberly A., Ladner, Jason T., Daligault, Hajnalka E., Davenport, Karen W., Jaissle, James, Frey, Kenneth G., Koroleva, Galina I., Bruce, David C., Coyne, Susan R., Broomall, Stacey M., Ketheesan, Natkunam, Mayo, Mark, Hoffmaster, Alex, Elrod, Mindy Glass, Wuthiekanun, Vanaporn, Tuanyok, Apichai, Norton, Robert, Currie, Bart J., Wagner, David M., Keim, Paul, Li, Po-E, Teshima, Hazuki, Gibbons, Henry S., Palacios, Gustavo F., Rosenzweig, C. Nicole, Redden, Cassie L., Xu, Yan, Minogue, Timothy D., Chain, Patrick S.
Publicado 2016