Chromatin Is Frequently Unknotted at the Megabase Scale

por Goundaroulis, Dimos, Lieberman Aiden, Erez, Stasiak, Andrzej
Publicado 2020

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

por Oluwadare, Oluwatosin, Highsmith, Max, Turner, Douglass, Lieberman-Aiden, Erez, Cheng, Jianlin
Publicado 2020

Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

por Oluwadare, Oluwatosin, Highsmith, Max, Turner, Douglass, Lieberman Aiden, Erez, Cheng, Jianlin
Publicado 2020

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

por Di Pierro, Michele, Cheng, Ryan R., Lieberman Aiden, Erez, Wolynes, Peter G., Onuchic, José N.
Publicado 2017

Exploring chromosomal structural heterogeneity across multiple cell lines

por Cheng, Ryan R, Contessoto, Vinicius G, Lieberman Aiden, Erez, Wolynes, Peter G, Di Pierro, Michele, Onuchic, Jose N
Publicado 2020

A Postural Assessment Utilizing Machine Learning Prospectively Identifies Older Adults at a High Risk of Falling

por Forth, Katharine E., Wirfel, Kelly L., Adams, Sasha D., Rianon, Nahid J., Lieberman Aiden, Erez, Madansingh, Stefan I.
Publicado 2020

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

por van Berkum, Nynke L., Lieberman-Aiden, Erez, Williams, Louise, Imakaev, Maxim, Gnirke, Andreas, Mirny, Leonid A., Dekker, Job, Lander, Eric S.
Publicado 2010

Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly

por Kaur, Parwinder, Lui, Christopher, Dudchenko, Olga, Nandety, Raja Sekhar, Hurgobin, Bhavna, Pham, Melanie, Lieberman Aiden, Erez, Wen, Jiangqi, Mysore, Kirankumar S
Publicado 2021

RedChIP identifies noncoding RNAs associated with genomic sites occupied by Polycomb and CTCF proteins

por Gavrilov, Alexey A., Sultanov, Rinat I., Magnitov, Mikhail D., Galitsyna, Aleksandra A., Dashinimaev, Erdem B., Lieberman Aiden, Erez, Razin, Sergey V.
Publicado 2021

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

por Sanborn, Adrian L, Yeh, Benjamin T, Feigerle, Jordan T, Hao, Cynthia V, Townshend, Raphael JL, Lieberman Aiden, Erez, Dror, Ron O, Kornberg, Roger D
Publicado 2021

MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface

por Houlard, Martin, Cutts, Erin E, Shamim, Muhammad S, Godwin, Jonathan, Weisz, David, Presser Aiden, Aviva, Lieberman Aiden, Erez, Schermelleh, Lothar, Vannini, Alessandro, Nasmyth, Kim
Publicado 2021

Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

por Sandoval-Velasco, Marcela, Rodríguez, Juan Antonio, Perez Estrada, Cynthia, Zhang, Guojie, Lieberman Aiden, Erez, Marti-Renom, Marc A, Gilbert, M Thomas P, Smith, Oliver
Publicado 2020

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome

por Contessoto, Vinícius G, Cheng, Ryan R, Hajitaheri, Arya, Dodero-Rojas, Esteban, Mello, Matheus F, Lieberman-Aiden, Erez, Wolynes, Peter G, Di Pierro, Michele, Onuchic, José N
Publicado 2020

The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution

por Van Dam, Matthew H., Cabras, Analyn Anzano, Henderson, James B., Rominger, Andrew J., Pérez Estrada, Cynthia, Omer, Arina D., Dudchenko, Olga, Lieberman Aiden, Erez, Lam, Athena W.
Publicado 2021

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

por Rowley, M. Jordan, Poulet, Axel, Nichols, Michael H., Bixler, Brianna J., Sanborn, Adrian L., Brouhard, Elizabeth A., Hermetz, Karen, Linsenbaum, Hannah, Csankovszki, Gyorgyi, Lieberman Aiden, Erez, Corces, Victor G.
Publicado 2020

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

por Cai, Yichao, Zhang, Ying, Loh, Yan Ping, Tng, Jia Qi, Lim, Mei Chee, Cao, Zhendong, Raju, Anandhkumar, Lieberman Aiden, Erez, Li, Shang, Manikandan, Lakshmanan, Tergaonkar, Vinay, Tucker-Kellogg, Greg, Fullwood, Melissa Jane
Publicado 2021

Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater

por Robledo-Ruiz, Diana A, Gan, Han Ming, Kaur, Parwinder, Dudchenko, Olga, Weisz, David, Khan, Ruqayya, Lieberman Aiden, Erez, Osipova, Ekaterina, Hiller, Michael, Morales, Hernán E, Magrath, Michael J L, Clarke, Rohan H, Sunnucks, Paul, Pavlova, Alexandra
Publicado 2022

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

por Kaushal, Anjali, Mohana, Giriram, Dorier, Julien, Özdemir, Isa, Omer, Arina, Cousin, Pascal, Semenova, Anastasiia, Taschner, Michael, Dergai, Oleksandr, Marzetta, Flavia, Iseli, Christian, Eliaz, Yossi, Weisz, David, Shamim, Muhammad Saad, Guex, Nicolas, Lieberman Aiden, Erez, Gambetta, Maria Cristina
Publicado 2021

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin(STAG1) from WAPL

por Wutz, Gordana, Ladurner, Rene, St Hilaire, Brian Glenn, Stocsits, Roman R, Nagasaka, Kota, Pignard, Benoit, Sanborn, Adrian, Tang, Wen, Várnai, Csilla, Ivanov, Miroslav P, Schoenfelder, Stefan, van der Lelij, Petra, Huang, Xingfan, Dürnberger, Gerhard, Roitinger, Elisabeth, Mechtler, Karl, Davidson, Iain Finley, Fraser, Peter, Lieberman-Aiden, Erez, Peters, Jan-Michael
Publicado 2020

The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758

por Mead, Dan, Hailer, Frank, Chadwick, Elisabeth, Portela Miguez, Roberto, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale Doulcan, Dudchenko, Olga, Omer, Arina, Weisz, David, Lieberman Aiden, Erez, McCarthy, Shane, Howe, Kerstin, Sims, Ying, Torrance, James, Tracey, Alan, Challis, Richard, Durbin, Richard, Blaxter, Mark
Publicado 2020