Identification and removal of ribosomal RNA sequences from metatranscriptomes

por Schmieder, Robert, Lim, Yan Wei, Edwards, Robert
Publicado 2012

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

por Schmieder, Robert, Lim, Yan Wei, Rohwer, Forest, Edwards, Robert
Publicado 2010

Biogeochemical Forces Shape the Composition and Physiology of Polymicrobial Communities in the Cystic Fibrosis Lung

por Quinn, Robert A., Lim, Yan Wei, Maughan, Heather, Conrad, Douglas, Rohwer, Forest, Whiteson, Katrine L.
Publicado 2014

Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples

por Lim, Yan Wei, Haynes, Matthew, Furlan, Mike, Robertson, Charles E., Harris, J. Kirk, Rohwer, Forest
Publicado 2014

Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents

por French, Beverly J., Lim, Yan Wei, Zgliczynski, Brian J., Edwards, Robert A., Rohwer, Forest, Sandin, Stuart A.
Publicado 2020

Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology

por Haas, Andreas Florian, Knowles, Ben, Lim, Yan Wei, McDole Somera, Tracey, Kelly, Linda Wegley, Hatay, Mark, Rohwer, Forest
Publicado 2014

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease

por Quinn, Robert A., Lim, Yan Wei, Mak, Tytus D., Whiteson, Katrine, Furlan, Mike, Conrad, Douglas, Rohwer, Forest, Dorrestein, Pieter
Publicado 2016

Ecological networking of cystic fibrosis lung infections

por Quinn, Robert A, Whiteson, Katrine, Lim, Yan Wei, Zhao, Jiangchao, Conrad, Douglas, LiPuma, John J, Rohwer, Forest, Widder, Stefanie
Publicado 2016

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation

por Whiteson, Katrine L, Meinardi, Simone, Lim, Yan Wei, Schmieder, Robert, Maughan, Heather, Quinn, Robert, Blake, Donald R, Conrad, Douglas, Rohwer, Forest
Publicado 2014

Broad Surveys of DNA Viral Diversity Obtained through Viral Metagenomics of Mosquitoes

por Ng, Terry Fei Fan, Willner, Dana L., Lim, Yan Wei, Schmieder, Robert, Chau, Betty, Nilsson, Christina, Anthony, Simon, Ruan, Yijun, Rohwer, Forest, Breitbart, Mya
Publicado 2011

Using viromes to predict novel immune proteins in non-model organisms

por Quistad, Steven D., Lim, Yan Wei, Silva, Genivaldo Gueiros Z., Nelson, Craig E., Haas, Andreas F., Kelly, Linda Wegley, Edwards, Robert A., Rohwer, Forest L.
Publicado 2016

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome

por Quinn, Robert A, Phelan, Vanessa V, Whiteson, Katrine L, Garg, Neha, Bailey, Barbara A, Lim, Yan Wei, Conrad, Douglas J, Dorrestein, Pieter C, Rohwer, Forest L
Publicado 2016

Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data

por Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Furlan, Mike, Matthews, T. David, Whiteson, Katrine, Poole, Stephen J., Hayes, Christopher S., Low, David A., Maughan, Heather, Edwards, Robert, Conrad, Douglas, Rohwer, Forest
Publicado 2013

Identification of a Novel Human Papillomavirus by Metagenomic Analysis of Samples from Patients with Febrile Respiratory Illness

por Mokili, John L., Dutilh, Bas E., Lim, Yan Wei, Schneider, Bradley S., Taylor, Travis, Haynes, Matthew R., Metzgar, David, Myers, Christopher A., Blair, Patrick J., Nosrat, Bahador, Wolfe, Nathan D., Rohwer, Forest
Publicado 2013

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information

por Cobián Güemes, Ana Georgina, Lim, Yan Wei, Quinn, Robert A., Conrad, Douglas J., Benler, Sean, Maughan, Heather, Edwards, Rob, Brettin, Thomas, Cantú, Vito Adrian, Cuevas, Daniel, Hamidi, Rohaum, Dorrestein, Pieter, Rohwer, Forest
Publicado 2019

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence

por Quinn, Robert A., Vermeij, Mark J. A., Hartmann, Aaron C., Galtier d'Auriac, Ines, Benler, Sean, Haas, Andreas, Quistad, Steven D., Lim, Yan Wei, Little, Mark, Sandin, Stuart, Smith, Jennifer E., Dorrestein, Pieter C., Rohwer, Forest
Publicado 2016

Species-Specific Viromes in the Ancestral Holobiont Hydra

por Grasis, Juris A., Lachnit, Tim, Anton-Erxleben, Friederike, Lim, Yan Wei, Schmieder, Robert, Fraune, Sebastian, Franzenburg, Sören, Insua, Santiago, Machado, GloriaMay, Haynes, Matthew, Little, Mark, Kimble, Robert, Rosenstiel, Philip, Rohwer, Forest L., Bosch, Thomas C. G.
Publicado 2014

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

por Garg, Neha, Zeng, Yi, Edlund, Anna, Melnik, Alexey V., Sanchez, Laura M., Mohimani, Hosein, Gurevich, Alexey, Miao, Vivian, Schiffler, Stefan, Lim, Yan Wei, Luzzatto-Knaan, Tal, Cai, Shengxin, Rohwer, Forest, Pevzner, Pavel A., Cichewicz, Robert H., Alexandrov, Theodore, Dorrestein, Pieter C.
Publicado 2016

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

por Lim, Yan Wei, Cuevas, Daniel A., Silva, Genivaldo Gueiros Z., Aguinaldo, Kristen, Dinsdale, Elizabeth A., Haas, Andreas F., Hatay, Mark, Sanchez, Savannah E., Wegley-Kelly, Linda, Dutilh, Bas E., Harkins, Timothy T., Lee, Clarence C., Tom, Warren, Sandin, Stuart A., Smith, Jennifer E., Zgliczynski, Brian, Vermeij, Mark J.A., Rohwer, Forest, Edwards, Robert A.
Publicado 2014

Diel population and functional synchrony of microbial communities on coral reefs

por Kelly, Linda Wegley, Nelson, Craig E., Haas, Andreas F., Naliboff, Douglas S., Calhoun, Sandi, Carlson, Craig A., Edwards, Robert A., Fox, Michael D., Hatay, Mark, Johnson, Maggie D., Kelly, Emily L. A., Lim, Yan Wei, Macherla, Saichetana, Quinlan, Zachary A., Silva, Genivaldo Gueiros Z., Vermeij, Mark J. A., Zgliczynski, Brian, Sandin, Stuart A., Smith, Jennifer E., Rohwer, Forest
Publicado 2019