BZINB Model-Based Pathway Analysis and Module Identification Facilitates Integration of Microbiome and Metabolome Data

por Lin, Bridget M., Cho, Hunyong, Liu, Chuwen, Roach, Jeff, Ribeiro, Apoena Aguiar, Divaris, Kimon, Wu, Di
Publicado 2023

Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models

por Xie, Jialiu, Cho, Hunyong, Lin, Bridget M., Pillai, Malvika, Heimisdottir, Lara H., Bandyopadhyay, Dipankar, Zou, Fei, Roach, Jeffrey, Divaris, Kimon, Wu, Di
Publicado 2021

Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data

por Cho, Hunyong, Qu, Yixiang, Liu, Chuwen, Tang, Boyang, Lyu, Ruiqi, Lin, Bridget M, Roach, Jeffrey, Azcarate-Peril, M Andrea, Aguiar Ribeiro, Apoena, Love, Michael I, Divaris, Kimon, Wu, Di
Publicado 2023

Selenomonas sputigena acts as a pathobiont mediating spatial structure and biofilm virulence in early childhood caries

por Cho, Hunyong, Ren, Zhi, Divaris, Kimon, Roach, Jeffrey, Lin, Bridget M., Liu, Chuwen, Azcarate-Peril, M. Andrea, Simancas-Pallares, Miguel A., Shrestha, Poojan, Orlenko, Alena, Ginnis, Jeannie, North, Kari E., Zandona, Andrea G. Ferreira, Ribeiro, Apoena Aguiar, Wu, Di, Koo, Hyun
Publicado 2023

Ancestry-driven metabolite variation provides insights into disease states in admixed populations

por Reynolds, Kaylia M., Horimoto, Andrea R. V. R., Lin, Bridget M., Zhang, Ying, Kurniansyah, Nuzulul, Yu, Bing, Boerwinkle, Eric, Qi, Qibin, Kaplan, Robert, Daviglus, Martha, Hou, Lifang, Zhou, Laura Y., Cai, Jianwen, Shaikh, Saame Raza, Sofer, Tamar, Browning, Sharon R., Franceschini, Nora
Publicado 2023

Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study

por Lin, Bridget M., Nadkarni, Girish N., Tao, Ran, Graff, Mariaelisa, Fornage, Myriam, Buyske, Steven, Matise, Tara C., Highland, Heather M., Wilkens, Lynne R., Carlson, Christopher S., Park, S. Lani, Setiawan, V. Wendy, Ambite, Jose Luis, Heiss, Gerardo, Boerwinkle, Eric, Lin, Dan-Yu, Morris, Andrew P., Loos, Ruth J. F., Kooperberg, Charles, North, Kari E., Wassel, Christina L., Franceschini, Nora
Publicado 2019

Whole-exome sequence analysis of anthropometric traits illustrates challenges in identifying effects of rare genetic variants

por Young, Kristin L., Fisher, Virginia, Deng, Xuan, Brody, Jennifer A., Graff, Misa, Lim, Elise, Lin, Bridget M., Xu, Hanfei, Amin, Najaf, An, Ping, Aslibekyan, Stella, Fohner, Alison E., Hidalgo, Bertha, Lenzini, Petra, Kraaij, Robert, Medina-Gomez, Carolina, Prokić, Ivana, Rivadeneira, Fernando, Sitlani, Colleen, Tao, Ran, van Rooij, Jeroen, Zhang, Di, Broome, Jai G., Buth, Erin J., Heavner, Benjamin D., Jain, Deepti, Smith, Albert V., Barnes, Kathleen, Boorgula, Meher Preethi, Chavan, Sameer, Darbar, Dawood, De Andrade, Mariza, Guo, Xiuqing, Haessler, Jeffrey, Irvin, Marguerite R., Kalyani, Rita R., Kardia, Sharon L.R., Kooperberg, Charles, Kim, Wonji, Mathias, Rasika A., McDonald, Merry-Lynn, Mitchell, Braxton D., Peyser, Patricia A., Regan, Elizabeth A., Redline, Susan, Reiner, Alexander P., Rich, Stephen S., Rotter, Jerome I., Smith, Jennifer A., Weiss, Scott, Wiggins, Kerri L., Yanek, Lisa R., Arnett, Donna, Heard-Costa, Nancy L., Leal, Suzanne, Lin, Danyu, McKnight, Barbara, Province, Michael, van Duijn, Cornelia M., North, Kari E., Cupples, L. Adrienne, Liu, Ching-Ti
Publicado 2022

Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium

por Lin, Bridget M, Grinde, Kelsey E, Brody, Jennifer A, Breeze, Charles E, Raffield, Laura M, Mychaleckyj, Josyf C, Thornton, Timothy A, Perry, James A, Baier, Leslie J, de las Fuentes, Lisa, Guo, Xiuqing, Heavner, Benjamin D, Hanson, Robert L, Hung, Yi-Jen, Qian, Huijun, Hsiung, Chao A, Hwang, Shih-Jen, Irvin, Margaret R, Jain, Deepti, Kelly, Tanika N, Kobes, Sayuko, Lange, Leslie, Lash, James P, Li, Yun, Liu, Xiaoming, Mi, Xuenan, Musani, Solomon K, Papanicolaou, George J, Parsa, Afshin, Reiner, Alex P, Salimi, Shabnam, Sheu, Wayne H-H, Shuldiner, Alan R, Taylor, Kent D, Smith, Albert V, Smith, Jennifer A, Tin, Adrienne, Vaidya, Dhananjay, Wallace, Robert B, Yamamoto, Kenichi, Sakaue, Saori, Matsuda, Koichi, Kamatani, Yoichiro, Momozawa, Yukihide, Yanek, Lisa R, Young, Betsi A, Zhao, Wei, Okada, Yukinori, Abecasis, Gonzalo, Psaty, Bruce M, Arnett, Donna K, Boerwinkle, Eric, Cai, Jianwen, Yii-Der Chen, Ida, Correa, Adolfo, Cupples, L Adrienne, He, Jiang, Kardia, Sharon LR, Kooperberg, Charles, Mathias, Rasika A, Mitchell, Braxton D, Nickerson, Deborah A, Turner, Steve T, Ramachandran, Vasan S, Rotter, Jerome I, Levy, Daniel, Kramer, Holly J, Köttgen, Anna, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, TOPMed Kidney Working Group, Rich, Stephen S, Lin, Dan-Yu, Browning, Sharon R, Franceschini, Nora
Publicado 2021