VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank

por Shean, Ryan C., Makhsous, Negar, Stoddard, Graham D., Lin, Michelle J., Greninger, Alexander L.
Publicado 2019

Sensitive Recovery of Complete SARS-CoV-2 Genomes from Clinical Samples by Use of Swift Biosciences’ SARS-CoV-2 Multiplex Amplicon Sequencing Panel

por Addetia, Amin, Lin, Michelle J., Peddu, Vikas, Roychoudhury, Pavitra, Jerome, Keith R., Greninger, Alexander L.
Publicado 2020

Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection

por Addetia, Amin, Tantalo, Lauren C., Lin, Michelle J., Xie, Hong, Huang, Meei-Li, Marra, Christina M., Greninger, Alexander L.
Publicado 2020

In Vivo Generation of BK and JC Polyomavirus Defective Viral Genomes in Human Urine Samples Associated with Higher Viral Loads

por Addetia, Amin, Phung, Quynh, Bradley, Benjamin T., Lin, Michelle J., Zhu, Haiying, Xie, Hong, Huang, Meei-Li, Greninger, Alexander L.
Publicado 2021

A SARS-CoV-2 Nucleocapsid Variant that Affects Antigen Test Performance

por Bourassa, Lori, Perchetti, Garrett A., Phung, Quynh, Lin, Michelle J., Mills, Margaret G., Roychoudhury, Pavitra, Harmon, Kimberly G., Reed, Jonathan C., Greninger, Alexander L.
Publicado 2021

Estimation of Full-Length TprK Diversity in Treponema pallidum subsp. pallidum

por Addetia, Amin, Lin, Michelle J., Phung, Quynh, Xie, Hong, Huang, Meei-Li, Ciccarese, Giulia, Dal Conte, Ivano, Cusini, Marco, Drago, Francesco, Giacani, Lorenzo, Greninger, Alexander L.
Publicado 2020

Longitudinal TprK profiling of in vivo and in vitro-propagated Treponema pallidum subsp. pallidum reveals accumulation of antigenic variants in absence of immune pressure

por Lin, Michelle J., Haynes, Austin M., Addetia, Amin, Lieberman, Nicole A. P., Phung, Quynh, Xie, Hong, Nguyen, Tien V., Molini, Barbara J., Lukehart, Sheila A., Giacani, Lorenzo, Greninger, Alexander L.
Publicado 2021

Host–pathogen dynamics in longitudinal clinical specimens from patients with COVID-19

por Lin, Michelle J., Rachleff, Victoria M., Xie, Hong, Shrestha, Lasata, Lieberman, Nicole A. P., Peddu, Vikas, Addetia, Amin, Casto, Amanda M., Breit, Nathan, Mathias, Patrick C., Huang, Meei-Li, Jerome, Keith R., Greninger, Alexander L., Roychoudhury, Pavitra
Publicado 2022

Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes

por Shrestha, Lasata, Lin, Michelle J., Xie, Hong, Mills, Margaret G., Mohamed Bakhash, Shah A., Gaur, Vinod P., Livingston, Robert J., Castor, Jared, Bruce, Emily A., Botten, Jason W., Huang, Meei-Li, Jerome, Keith R., Greninger, Alexander L., Roychoudhury, Pavitra
Publicado 2022

Analysis of SARS-CoV-2 infection dynamic in vivo using reporter-expressing viruses

por Ye, Chengjin, Chiem, Kevin, Park, Jun-Gyu, Silvas, Jesus A., Morales Vasquez, Desarey, Sourimant, Julien, Lin, Michelle J., Greninger, Alexander L., Plemper, Richard K., Torrelles, Jordi B., Kobie, James J., Walter, Mark R., de la Torre, Juan Carlos, Martinez-Sobrido, Luis
Publicado 2021

Orally Efficacious Broad-Spectrum Allosteric Inhibitor of Paramyxovirus Polymerase

por Cox, Robert M, Sourimant, Julien, Toots, Mart, Yoon, Jeong-Joong, Ikegame, Satoshi, Govindarajan, Mugunthan, Watkinson, Ruth E, Thibault, Patricia, Makhsous, Negar, Lin, Michelle J., Marengo, Jose R, Sticher, Zachary, Kolykhalov, Alexander A, Natchus, Michael G, Greninger, Alexander L, Lee, Benhur, Plemper, Richard K
Publicado 2020

Inhibition of Coronavirus Entry In Vitro and Ex Vivo by a Lipid-Conjugated Peptide Derived from the SARS-CoV-2 Spike Glycoprotein HRC Domain

por Outlaw, Victor K., Bovier, Francesca T., Mears, Megan C., Cajimat, Maria N., Zhu, Yun, Lin, Michelle J., Addetia, Amin, Lieberman, Nicole A. P., Peddu, Vikas, Xie, Xuping, Shi, Pei-Yong, Greninger, Alexander L., Gellman, Samuel H., Bente, Dennis A., Moscona, Anne, Porotto, Matteo
Publicado 2020

Molecular Features of the Measles Virus Viral Fusion Complex That Favor Infection and Spread in the Brain

por Mathieu, Cyrille, Bovier, Francesca T., Ferren, Marion, Lieberman, Nicole A. P., Predella, Camilla, Lalande, Alexandre, Peddu, Vikas, Lin, Michelle J., Addetia, Amin, Patel, Achchhe, Outlaw, Victor, Corneo, Barbara, Dorrello, N. Valerio, Briese, Thomas, Hardie, Diana, Horvat, Branka, Moscona, Anne, Greninger, Alexander L., Porotto, Matteo
Publicado 2021

A Bifluorescent-Based Assay for the Identification of Neutralizing Antibodies against SARS-CoV-2 Variants of Concern In Vitro and In Vivo

por Chiem, Kevin, Morales Vasquez, Desarey, Silvas, Jesus A., Park, Jun-Gyu, Piepenbrink, Michael S., Sourimant, Julien, Lin, Michelle J., Greninger, Alexander L., Plemper, Richard K., Torrelles, Jordi B., Walter, Mark R., de la Torre, Juan C., Kobie, James K., Ye, Chengjin, Martinez-Sobrido, Luis
Publicado 2021

Oral prodrug of remdesivir parent GS-441524 is efficacious against SARS-CoV-2 in ferrets

por Cox, Robert M., Wolf, Josef D., Lieber, Carolin M., Sourimant, Julien, Lin, Michelle J., Babusis, Darius, DuPont, Venice, Chan, Julie, Barrett, Kim T., Lye, Diane, Kalla, Rao, Chun, Kwon, Mackman, Richard L., Ye, Chengjin, Cihlar, Tomas, Martinez-Sobrido, Luis, Greninger, Alexander L., Bilello, John P., Plemper, Richard K.
Publicado 2021

De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report

por Gandhi, Shiv, Klein, Jonathan, Robertson, Alexander J., Peña-Hernández, Mario A., Lin, Michelle J., Roychoudhury, Pavitra, Lu, Peiwen, Fournier, John, Ferguson, David, Mohamed Bakhash, Shah A. K., Catherine Muenker, M., Srivathsan, Ariktha, Wunder, Elsio A., Kerantzas, Nicholas, Wang, Wenshuai, Lindenbach, Brett, Pyle, Anna, Wilen, Craig B., Ogbuagu, Onyema, Greninger, Alexander L., Iwasaki, Akiko, Schulz, Wade L., Ko, Albert I.
Publicado 2022

Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar

por Lieberman, Nicole A. P., Lin, Michelle J., Xie, Hong, Shrestha, Lasata, Nguyen, Tien, Huang, Meei-Li, Haynes, Austin M., Romeis, Emily, Wang, Qian-Qiu, Zhang, Rui-Li, Kou, Cai-Xia, Ciccarese, Giulia, Dal Conte, Ivano, Cusini, Marco, Drago, Francesco, Nakayama, Shu-ichi, Lee, Kenichi, Ohnishi, Makoto, Konda, Kelika A., Vargas, Silver K., Eguiluz, Maria, Caceres, Carlos F., Klausner, Jeffrey D., Mitjà, Oriol, Rompalo, Anne, Mulcahy, Fiona, Hook, Edward W., Lukehart, Sheila A., Casto, Amanda M., Roychoudhury, Pavitra, DiMaio, Frank, Giacani, Lorenzo, Greninger, Alexander L.
Publicado 2021