coupleCoC+: An information-theoretic co-clustering-based transfer learning framework for the integrative analysis of single-cell genomic data

por Zeng, Pengcheng, Lin, Zhixiang
Publicado 2021

iPoLNG—An unsupervised model for the integrative analysis of single-cell multiomics data

por Zhang, Wenyu, Lin, Zhixiang
Publicado 2023

scAWMV: an adaptively weighted multi-view learning framework for the integrative analysis of parallel scRNA-seq and scATAC-seq data

por Zeng, Pengcheng, Ma, Yuanyuan, Lin, Zhixiang
Publicado 2022

stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics

por Li, Chen, Chan, Ting-Fung, Yang, Can, Lin, Zhixiang
Publicado 2023

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data

por Zamanighomi, Mahdi, Lin, Zhixiang, Wang, Yong, Jiang, Rui, Wong, Wing Hung
Publicado 2017

Dimensionality reduction for single cell RNA sequencing data using constrained robust non-negative matrix factorization

por Zhang, Shuqin, Yang, Liu, Yang, Jinwen, Lin, Zhixiang, Ng, Michael K
Publicado 2020

RA3 is a reference-guided approach for epigenetic characterization of single cells

por Chen, Shengquan, Yan, Guanao, Zhang, Wenyu, Li, Jinzhao, Jiang, Rui, Lin, Zhixiang
Publicado 2021

FIRM: Flexible integration of single-cell RNA-sequencing data for large-scale multi-tissue cell atlas datasets

por Ming, Jingsi, Lin, Zhixiang, Zhao, Jia, Wan, Xiang, Yang, Can, Wu, Angela Ruohao
Publicado 2022

CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens

por Daley, Timothy P., Lin, Zhixiang, Lin, Xueqiu, Liu, Yanxia, Wong, Wing Hung, Qi, Lei S.
Publicado 2018

Mendelian randomization for causal inference accounting for pleiotropy and sample structure using genome-wide summary statistics

por Hu, Xianghong, Zhao, Jia, Lin, Zhixiang, Wang, Yang, Peng, Heng, Zhao, Hongyu, Wan, Xiang, Yang, Can
Publicado 2022

Unsupervised clustering and epigenetic classification of single cells

por Zamanighomi, Mahdi, Lin, Zhixiang, Daley, Timothy, Chen, Xi, Duren, Zhana, Schep, Alicia, Greenleaf, William J., Wong, Wing Hung
Publicado 2018

Divergence in a master variator generates distinct phenotypes and transcriptional responses

por Gallagher, Jennifer E.G., Zheng, Wei, Rong, Xiaoqing, Miranda, Noraliz, Lin, Zhixiang, Dunn, Barbara, Zhao, Hongyu, Snyder, Michael P.
Publicado 2014

Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope

por Wan, Xiaomeng, Xiao, Jiashun, Tam, Sindy Sing Ting, Cai, Mingxuan, Sugimura, Ryohichi, Wang, Yang, Wan, Xiang, Lin, Zhixiang, Wu, Angela Ruohao, Yang, Can
Publicado 2023