Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing

por Lind, Abigail L., Pollard, Katherine S.
Publicado 2021

Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive in Aspergillus

por Lind, Abigail L., Smith, Timothy D., Saterlee, Timothy, Calvo, Ana M., Rokas, Antonis
Publicado 2016

An LaeA- and BrlA-Dependent Cellular Network Governs Tissue-Specific Secondary Metabolism in the Human Pathogen Aspergillus fumigatus

por Lind, Abigail L., Lim, Fang Yun, Soukup, Alexandra A., Keller, Nancy P., Rokas, Antonis
Publicado 2018

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium

por Steenwyk, Jacob L., Shen, Xing-Xing, Lind, Abigail L., Goldman, Gustavo H., Rokas, Antonis
Publicado 2019

The Fumagillin Gene Cluster, an Example of Hundreds of Genes under veA Control in Aspergillus fumigatus

por Dhingra, Sourabh, Lind, Abigail L., Lin, Hsiao-Ching, Tang, Yi, Rokas, Antonis, Calvo, Ana M.
Publicado 2013

Nanoscale architecture of the Schizosaccharomyces pombe contractile ring

por McDonald, Nathan A, Lind, Abigail L, Smith, Sarah E, Li, Rong, Gould, Kathleen L
Publicado 2017

Examining the Evolution of the Regulatory Circuit Controlling Secondary Metabolism and Development in the Fungal Genus Aspergillus

por Lind, Abigail L., Wisecaver, Jennifer H., Smith, Timothy D., Feng, Xuehuan, Calvo, Ana M., Rokas, Antonis
Publicado 2015

Draft Genome Sequences of a Phylogenetically Diverse Suite of Pseudomonas syringae Strains from Multiple Source Populations

por Baltrus, David A., Yourstone, Scott, Lind, Abigail, Guilbaud, Caroline, Sands, David C., Jones, Corbin D., Morris, Cindy E., Dangl, Jeffrey L.
Publicado 2014

Beyond the Biosynthetic Gene Cluster Paradigm: Genome-Wide Coexpression Networks Connect Clustered and Unclustered Transcription Factors to Secondary Metabolic Pathways

por Kwon, Min Jin, Steiniger, Charlotte, Cairns, Timothy C., Wisecaver, Jennifer H., Lind, Abigail L., Pohl, Carsten, Regner, Carmen, Rokas, Antonis, Meyer, Vera
Publicado 2021

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

por Lind, Abigail L., Wisecaver, Jennifer H., Lameiras, Catarina, Wiemann, Philipp, Palmer, Jonathan M., Keller, Nancy P., Rodrigues, Fernando, Goldman, Gustavo H., Rokas, Antonis
Publicado 2017

Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny

por Mucyn, Tatiana S., Yourstone, Scott, Lind, Abigail L., Biswas, Surojit, Nishimura, Marc T., Baltrus, David A., Cumbie, Jason S., Chang, Jeff H., Jones, Corbin D., Dangl, Jeffery L., Grant, Sarah R.
Publicado 2014

The Aspergillus fumigatus Mismatch Repair MSH2 Homolog Is Important for Virulence and Azole Resistance

por dos Reis, Thaila Fernanda, Silva, Lilian Pereira, de Castro, Patrícia Alves, do Carmo, Rafaela Andrade, Marini, Marjorie Mendes, da Silveira, José Franco, Ferreira, Beatriz Henriques, Rodrigues, Fernando, Lind, Abigail Lee, Rokas, Antonis, Goldman, Gustavo H.
Publicado 2019

Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans

por Bastos, Rafael Wesley, Valero, Clara, Silva, Lilian Pereira, Schoen, Taylor, Drott, Milton, Brauer, Verônica, Silva-Rocha, Rafael, Lind, Abigail, Steenwyk, Jacob L., Rokas, Antonis, Rodrigues, Fernando, Resendiz-Sharpe, Agustin, Lagrou, Katrien, Marcet-Houben, Marina, Gabaldón, Toni, McDonnell, Erin, Reid, Ian, Tsang, Adrian, Oakley, Berl R., Loures, Flávio Vieira, Almeida, Fausto, Huttenlocher, Anna, Keller, Nancy P., Ries, Laure Nicolas Annick, Goldman, Gustavo H.
Publicado 2020

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

por Lind, Abigail L., Lai, Yvonne Y.Y., Mostovoy, Yulia, Holloway, Alisha K., Iannucci, Alessio, Mak, Angel C.Y., Fondi, Marco, Orlandini, Valerio, Eckalbar, Walter L., Milan, Massimo, Rovatsos, Michail, Kichigin, Ilya G., Makunin, Alex I., Johnson Pokorná, Martina, Altmanová, Marie, Trifonov, Vladimir A., Schijlen, Elio, Kratochvíl, Lukáš, Fani, Renato, Velenský, Petr, Rehák, Ivan, Patarnello, Tomaso, Jessop, Tim S., Hicks, James W., Ryder, Oliver A., Mendelson, Joseph R., Ciofi, Claudio, Kwok, Pui-Yan, Pollard, Katherine S., Bruneau, Benoit G.
Publicado 2019

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms

por Gordon, David E., Hiatt, Joseph, Bouhaddou, Mehdi, Rezelj, Veronica V., Ulferts, Svenja, Braberg, Hannes, Jureka, Alexander S., Obernier, Kirsten, Guo, Jeffrey Z., Batra, Jyoti, Kaake, Robyn M., Weckstein, Andrew R., Owens, Tristan W., Gupta, Meghna, Pourmal, Sergei, Titus, Erron W., Cakir, Merve, Soucheray, Margaret, McGregor, Michael, Cakir, Zeynep, Jang, Gwendolyn, O’Meara, Matthew J., Tummino, Tia A., Zhang, Ziyang, Foussard, Helene, Rojc, Ajda, Zhou, Yuan, Kuchenov, Dmitry, Hüttenhain, Ruth, Xu, Jiewei, Eckhardt, Manon, Swaney, Danielle L., Fabius, Jacqueline M., Ummadi, Manisha, Tutuncuoglu, Beril, Rathore, Ujjwal, Modak, Maya, Haas, Paige, Haas, Kelsey M., Naing, Zun Zar Chi, Pulido, Ernst H., Shi, Ying, Barrio-Hernandez, Inigo, Memon, Danish, Petsalaki, Eirini, Dunham, Alistair, Marrero, Miguel Correa, Burke, David, Koh, Cassandra, Vallet, Thomas, Silvas, Jesus A., Azumaya, Caleigh M., Billesbølle, Christian, Brilot, Axel F., Campbell, Melody G., Diallo, Amy, Dickinson, Miles Sasha, Diwanji, Devan, Herrera, Nadia, Hoppe, Nick, Kratochvil, Huong T., Liu, Yanxin, Merz, Gregory E., Moritz, Michelle, Nguyen, Henry C., Nowotny, Carlos, Puchades, Cristina, Rizo, Alexandrea N., Schulze-Gahmen, Ursula, Smith, Amber M., Sun, Ming, Young, Iris D., Zhao, Jianhua, Asarnow, Daniel, Biel, Justin, Bowen, Alisa, Braxton, Julian R., Chen, Jen, Chio, Cynthia M., Chio, Un Seng, Deshpande, Ishan, Doan, Loan, Faust, Bryan, Flores, Sebastian, Jin, Mingliang, Kim, Kate, Lam, Victor L., Li, Fei, Li, Junrui, Li, Yen-Li, Li, Yang, Liu, Xi, Lo, Megan, Lopez, Kyle E., Melo, Arthur A., Moss, Frank R., Nguyen, Phuong, Paulino, Joana, Pawar, Komal Ishwar, Peters, Jessica K., Pospiech, Thomas H., Safari, Maliheh, Sangwan, Smriti, Schaefer, Kaitlin, Thomas, Paul V., Thwin, Aye C., Trenker, Raphael, Tse, Eric, Tsui, Tsz Kin Martin, Wang, Feng, Whitis, Natalie, Yu, Zanlin, Zhang, Kaihua, Zhang, Yang, Zhou, Fengbo, Saltzberg, Daniel, Hodder, Anthony J., Shun-Shion, Amber S., Williams, Daniel M., White, Kris M., Rosales, Romel, Kehrer, Thomas, Miorin, Lisa, Moreno, Elena, Patel, Arvind H., Rihn, Suzannah, Khalid, Mir M., Vallejo-Gracia, Albert, Fozouni, Parinaz, Simoneau, Camille R., Roth, Theodore L., Wu, David, Karim, Mohd Anisul, Ghoussaini, Maya, Dunham, Ian, Berardi, Francesco, Weigang, Sebastian, Chazal, Maxime, Park, Jisoo, Logue, James, McGrath, Marisa, Weston, Stuart, Haupt, Robert, Hastie, C. James, Elliott, Matthew, Brown, Fiona, Burness, Kerry A., Reid, Elaine, Dorward, Mark, Johnson, Clare, Wilkinson, Stuart G., Geyer, Anna, Giesel, Daniel M., Baillie, Carla, Raggett, Samantha, Leech, Hannah, Toth, Rachel, Goodman, Nicola, Keough, Kathleen C., Lind, Abigail L., Klesh, Reyna J., Hemphill, Kafi R., Carlson-Stevermer, Jared, Oki, Jennifer, Holden, Kevin, Maures, Travis, Pollard, Katherine S., Sali, Andrej, Agard, David A., Cheng, Yifan, Fraser, James S., Frost, Adam, Jura, Natalia, Kortemme, Tanja, Manglik, Aashish, Southworth, Daniel R., Stroud, Robert M., Alessi, Dario R., Davies, Paul, Frieman, Matthew B., Ideker, Trey, Abate, Carmen, Jouvenet, Nolwenn, Kochs, Georg, Shoichet, Brian, Ott, Melanie, Palmarini, Massimo, Shokat, Kevan M., García-Sastre, Adolfo, Rassen, Jeremy A., Grosse, Robert, Rosenberg, Oren S., Verba, Kliment A., Basler, Christopher F., Vignuzzi, Marco, Peden, Andrew A., Beltrao, Pedro, Krogan, Nevan J.
Publicado 2020