Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches

por Lipska, Agnieszka G., Sieradzan, Adam K., Atmaca, Sümeyye, Czaplewski, Cezary, Liwo, Adam
Publicado 2023

Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems

por Liwo, Adam, Czaplewski, Cezary, Sieradzan, Adam K., Lipska, Agnieszka G., Samsonov, Sergey A., Murarka, Rajesh K.
Publicado 2021

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

por Carretero-Paulet, Lorenzo, Lipska, Agnieszka, Pérez-Gil, Jordi, Sangari, Félix J, Albert, Victor A, Rodríguez-Concepción, Manuel
Publicado 2013

UNRES-GPU for physics-based coarse-grained simulations of protein systems at biological time- and size-scales

por Ocetkiewicz, Krzysztof M, Czaplewski, Cezary, Krawczyk, Henryk, Lipska, Agnieszka G, Liwo, Adam, Proficz, Jerzy, Sieradzan, Adam K, Czarnul, Paweł
Publicado 2023

Analysis of Procollagen C-Proteinase Enhancer-1/Glycosaminoglycan Binding Sites and of the Potential Role of Calcium Ions in the Interaction

por Potthoff, Jan, Bojarski, Krzysztof K., Kohut, Gergely, Lipska, Agnieszka G., Liwo, Adam, Kessler, Efrat, Ricard-Blum, Sylvie, Samsonov, Sergey A.
Publicado 2019

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

por Karczyńska, Agnieszka S., Ziȩba, Karolina, Uciechowska, Urszula, Mozolewska, Magdalena A., Krupa, Paweł, Lubecka, Emilia A., Lipska, Agnieszka G., Sikorska, Celina, Samsonov, Sergey A., Sieradzan, Adam K., Giełdoń, Artur, Liwo, Adam, Ślusarz, Rafał, Ślusarz, Magdalena, Lee, Jooyoung, Joo, Keehyoung, Czaplewski, Cezary
Publicado 2020

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

por Keasar, Chen, McGuffin, Liam J., Wallner, Björn, Chopra, Gaurav, Adhikari, Badri, Bhattacharya, Debswapna, Blake, Lauren, Bortot, Leandro Oliveira, Cao, Renzhi, Dhanasekaran, B. K., Dimas, Itzhel, Faccioli, Rodrigo Antonio, Faraggi, Eshel, Ganzynkowicz, Robert, Ghosh, Sambit, Ghosh, Soma, Giełdoń, Artur, Golon, Lukasz, He, Yi, Heo, Lim, Hou, Jie, Khan, Main, Khatib, Firas, Khoury, George A., Kieslich, Chris, Kim, David E., Krupa, Pawel, Lee, Gyu Rie, Li, Hongbo, Li, Jilong, Lipska, Agnieszka, Liwo, Adam, Maghrabi, Ali Hassan A., Mirdita, Milot, Mirzaei, Shokoufeh, Mozolewska, Magdalena A., Onel, Melis, Ovchinnikov, Sergey, Shah, Anand, Shah, Utkarsh, Sidi, Tomer, Sieradzan, Adam K., Ślusarz, Magdalena, Ślusarz, Rafal, Smadbeck, James, Tamamis, Phanourios, Trieber, Nicholas, Wirecki, Tomasz, Yin, Yanping, Zhang, Yang, Bacardit, Jaume, Baranowski, Maciej, Chapman, Nicholas, Cooper, Seth, Defelicibus, Alexandre, Flatten, Jeff, Koepnick, Brian, Popović, Zoran, Zaborowski, Bartlomiej, Baker, David, Cheng, Jianlin, Czaplewski, Cezary, Delbem, Alexandre Cláudio Botazzo, Floudas, Christodoulos, Kloczkowski, Andrzej, Ołdziej, Stanislaw, Levitt, Michael, Scheraga, Harold, Seok, Chaok, Söding, Johannes, Vishveshwara, Saraswathi, Xu, Dong, Crivelli, Silvia N.
Publicado 2018