Making the most of RNA-seq: Pre-processing sequencing data with Opossum for reliable SNP variant detection

por Oikkonen, Laura, Lise, Stefano
Publicado 2017

Docking protein domains in contact space

por Lise, Stefano, Walker-Taylor, Alice, Jones, David T
Publicado 2006

Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods

por Lise, Stefano, Archambeau, Cedric, Pontil, Massimiliano, Jones, David T
Publicado 2009

Predictions of Hot Spot Residues at Protein-Protein Interfaces Using Support Vector Machines

por Lise, Stefano, Buchan, Daniel, Pontil, Massimiliano, Jones, David T.
Publicado 2011

PepSite: prediction of peptide-binding sites from protein surfaces

por Trabuco, Leonardo G., Lise, Stefano, Petsalaki, Evangelia, Russell, Robert B.
Publicado 2012

The Immunogenic Potential of Recurrent Cancer Drug Resistance Mutations: An In Silico Study

por Punta, Marco, Jennings, Victoria A., Melcher, Alan A., Lise, Stefano
Publicado 2020

Autosomal dominant osteopetrosis associated with renal tubular acidosis is due to a CLCN7 mutation

por Piret, Sian E., Gorvin, Caroline M., Trinh, Anne, Taylor, John, Lise, Stefano, Taylor, Jenny C., Ebeling, Peter R., Thakker, Rajesh V.
Publicado 2016

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

por Kleftogiannis, Dimitrios, Punta, Marco, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q., Gasi Tandefelt, Delila, Conteduca, Vincenza, Wetterskog, Daniel, Attard, Gerhardt, Lise, Stefano
Publicado 2019

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

por Heindl, Andreas, Khan, Adnan Mujahid, Rodrigues, Daniel Nava, Eason, Katherine, Sadanandam, Anguraj, Orbegoso, Cecilia, Punta, Marco, Sottoriva, Andrea, Lise, Stefano, Banerjee, Susana, Yuan, Yinyin
Publicado 2018

Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer

por von Loga, Katharina, Woolston, Andrew, Punta, Marco, Barber, Louise J., Griffiths, Beatrice, Semiannikova, Maria, Spain, Georgia, Challoner, Benjamin, Fenwick, Kerry, Simon, Ronald, Marx, Andreas, Sauter, Guido, Lise, Stefano, Matthews, Nik, Gerlinger, Marco
Publicado 2020

Author Correction: Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer

por von Loga, Katharina, Woolston, Andrew, Punta, Marco, Barber, Louise J., Griffiths, Beatrice, Semiannikova, Maria, Spain, Georgia, Challoner, Benjamin, Fenwick, Kerry, Simon, Ronald, Marx, Andreas, Sauter, Guido, Lise, Stefano, Matthews, Nik, Gerlinger, Marco
Publicado 2020

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

por Pearl, Frances, Todd, Annabel, Sillitoe, Ian, Dibley, Mark, Redfern, Oliver, Lewis, Tony, Bennett, Christopher, Marsden, Russell, Grant, Alistair, Lee, David, Akpor, Adrian, Maibaum, Michael, Harrison, Andrew, Dallman, Timothy, Reeves, Gabrielle, Diboun, Ilhem, Addou, Sarah, Lise, Stefano, Johnston, Caroline, Sillero, Antonio, Thornton, Janet, Orengo, Christine
Publicado 2005

Genome-wide plasma DNA methylation features of metastatic prostate cancer

por Wu, Anjui, Cremaschi, Paolo, Wetterskog, Daniel, Conteduca, Vincenza, Franceschini, Gian Marco, Kleftogiannis, Dimitrios, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q., Benelli, Matteo, Salvi, Samanta, Gurioli, Giorgia, Feber, Andrew, Pereira, Mariana Buongermino, Wingate, Anna Maria, Gonzalez-Billalebeitia, Enrique, De Giorgi, Ugo, Demichelis, Francesca, Lise, Stefano, Attard, Gerhardt
Publicado 2020

Combination of Whole Genome Sequencing, Linkage, and Functional Studies Implicates a Missense Mutation in Titin as a Cause of Autosomal Dominant Cardiomyopathy With Features of Lef...

por Hastings, Robert, de Villiers, Carin P., Hooper, Charlotte, Ormondroyd, Liz, Pagnamenta, Alistair, Lise, Stefano, Salatino, Silvia, Knight, Samantha J.L., Taylor, Jenny C., Thomson, Kate L., Arnold, Linda, Chatziefthimiou, Spyros D., Konarev, Petr V., Wilmanns, Matthias, Ehler, Elisabeth, Ghisleni, Andrea, Gautel, Mathias, Blair, Edward, Watkins, Hugh, Gehmlich, Katja
Publicado 2016

Copy number architectures define treatment-mediated selection of lethal prostate cancer clones

por Hasan, A. M. Mahedi, Cremaschi, Paolo, Wetterskog, Daniel, Jayaram, Anuradha, Wong, Stephen Q., Williams, Scott, Pasam, Anupama, Trigos, Anna, Trujillo, Blanca, Grist, Emily, Friedrich, Stefanie, Vainauskas, Osvaldas, Parry, Marina, Ismail, Mazlina, Devlies, Wout, Wingate, Anna, Linch, Mark, Naceur-Lombardelli, Cristina, Swanton, Charles, Jamal-Hanjani, Mariam, Lise, Stefano, Sandhu, Shahneen, Attard, Gerhardt
Publicado 2023

Next generation sequencing for molecular diagnosis of neurological disorders using ataxias as a model

por Németh, Andrea H., Kwasniewska, Alexandra C., Lise, Stefano, Parolin Schnekenberg, Ricardo, Becker, Esther B. E., Bera, Katarzyna D., Shanks, Morag E., Gregory, Lorna, Buck, David, Zameel Cader, M., Talbot, Kevin, de Silva, Rajith, Fletcher, Nicholas, Hastings, Rob, Jayawant, Sandeep, Morrison, Patrick J., Worth, Paul, Taylor, Malcolm, Tolmie, John, O’Regan, Mary, Valentine, Ruth, Packham, Emily, Evans, Julie, Seller, Anneke, Ragoussis, Jiannis
Publicado 2013

Recessive Mutations in SPTBN2 Implicate β-III Spectrin in Both Cognitive and Motor Development

por Lise, Stefano, Clarkson, Yvonne, Perkins, Emma, Kwasniewska, Alexandra, Sadighi Akha, Elham, Parolin Schnekenberg, Ricardo, Suminaite, Daumante, Hope, Jilly, Baker, Ian, Gregory, Lorna, Green, Angie, Allan, Chris, Lamble, Sarah, Jayawant, Sandeep, Quaghebeur, Gerardine, Cader, M. Zameel, Hughes, Sarah, Armstrong, Richard J. E., Kanapin, Alexander, Rimmer, Andrew, Lunter, Gerton, Mathieson, Iain, Cazier, Jean-Baptiste, Buck, David, Taylor, Jenny C., Bentley, David, McVean, Gilean, Donnelly, Peter, Knight, Samantha J. L., Jackson, Mandy, Ragoussis, Jiannis, Németh, Andrea H.
Publicado 2012

Accumulation of copy number alterations and clinical progression across advanced prostate cancer

por Grist, Emily, Friedrich, Stefanie, Brawley, Christopher, Mendes, Larissa, Parry, Marina, Ali, Adnan, Haran, Aine, Hoyle, Alex, Gilson, Claire, Lall, Sharanpreet, Zakka, Leila, Bautista, Carla, Landless, Alex, Nowakowska, Karolina, Wingate, Anna, Wetterskog, Daniel, Hasan, A. M. Mahedi, Akato, Nafisah B., Richmond, Malissa, Ishaq, Sofeya, Matthews, Nik, Hamid, Anis A., Sweeney, Christopher J., Sydes, Matthew R., Berney, Daniel M., Lise, Stefano, Parmar, Mahesh K. B., Clarke, Noel W., James, Nicholas D., Cremaschi, Paolo, Brown, Louise C., Attard, Gerhardt
Publicado 2022

Genomic and Transcriptomic Determinants of Therapy Resistance and Immune Landscape Evolution during Anti-EGFR Treatment in Colorectal Cancer

por Woolston, Andrew, Khan, Khurum, Spain, Georgia, Barber, Louise J., Griffiths, Beatrice, Gonzalez-Exposito, Reyes, Hornsteiner, Lisa, Punta, Marco, Patil, Yatish, Newey, Alice, Mansukhani, Sonia, Davies, Matthew N., Furness, Andrew, Sclafani, Francesco, Peckitt, Clare, Jiménez, Mirta, Kouvelakis, Kyriakos, Ranftl, Romana, Begum, Ruwaida, Rana, Isma, Thomas, Janet, Bryant, Annette, Quezada, Sergio, Wotherspoon, Andrew, Khan, Nasir, Fotiadis, Nikolaos, Marafioti, Teresa, Powles, Thomas, Lise, Stefano, Calvo, Fernando, Guettler, Sebastian, von Loga, Katharina, Rao, Sheela, Watkins, David, Starling, Naureen, Chau, Ian, Sadanandam, Anguraj, Cunningham, David, Gerlinger, Marco
Publicado 2019

Premalignant SOX2 overexpression in the fallopian tubes of ovarian cancer patients: Discovery and validation studies

por Hellner, Karin, Miranda, Fabrizio, Fotso Chedom, Donatien, Herrero-Gonzalez, Sandra, Hayden, Daniel M., Tearle, Rick, Artibani, Mara, KaramiNejadRanjbar, Mohammad, Williams, Ruth, Gaitskell, Kezia, Elorbany, Samar, Xu, Ruoyan, Laios, Alex, Buiga, Petronela, Ahmed, Karim, Dhar, Sunanda, Zhang, Rebecca Yu, Campo, Leticia, Myers, Kevin A., Lozano, María, Ruiz-Miró, María, Gatius, Sónia, Mota, Alba, Moreno-Bueno, Gema, Matias-Guiu, Xavier, Benítez, Javier, Witty, Lorna, McVean, Gil, Leedham, Simon, Tomlinson, Ian, Drmanac, Radoje, Cazier, Jean-Baptiste, Klein, Robert, Dunne, Kevin, Bast, Robert C., Kennedy, Stephen H., Hassan, Bassim, Lise, Stefano, Garcia, María José, Peters, Brock A., Yau, Christopher, Sauka-Spengler, Tatjana, Ahmed, Ahmed Ashour
Publicado 2016