MBE: model-based enrichment estimation and prediction for differential sequencing data

por Busia, Akosua, Listgarten, Jennifer
Publicado 2023

On the sparsity of fitness functions and implications for learning

por Brookes, David H., Aghazadeh, Amirali, Listgarten, Jennifer
Publicado 2021

Patterns of methylation heritability in a genome-wide analysis of four brain regions

por Quon, Gerald, Lippert, Christoph, Heckerman, David, Listgarten, Jennifer
Publicado 2013

A Statistical Framework for Modeling HLA-Dependent T Cell Response Data

por Listgarten, Jennifer, Frahm, Nicole, Kadie, Carl, Brander, Christian, Heckerman, David
Publicado 2007

Conformal prediction under feedback covariate shift for biomolecular design

por Fannjiang, Clara, Bates, Stephen, Angelopoulos, Anastasios N., Listgarten, Jennifer, Jordan, Michael I.
Publicado 2022

Learning Transcriptional Regulatory Relationships Using Sparse Graphical Models

por Zhang, Xiang, Cheng, Wei, Listgarten, Jennifer, Kadie, Carl, Huang, Shunping, Wang, Wei, Heckerman, David
Publicado 2012

The benefits of selecting phenotype-specific variants for applications of mixed models in genomics

por Lippert, Christoph, Quon, Gerald, Kang, Eun Yong, Kadie, Carl M., Listgarten, Jennifer, Heckerman, David
Publicado 2013

A powerful and efficient set test for genetic markers that handles confounders

por Listgarten, Jennifer, Lippert, Christoph, Kang, Eun Yong, Xiang, Jing, Kadie, Carl M., Heckerman, David
Publicado 2013

Greater power and computational efficiency for kernel-based association testing of sets of genetic variants

por Lippert, Christoph, Xiang, Jing, Horta, Danilo, Widmer, Christian, Kadie, Carl, Heckerman, David, Listgarten, Jennifer
Publicado 2014

Statistical Resolution of Ambiguous HLA Typing Data

por Listgarten, Jennifer, Brumme, Zabrina, Kadie, Carl, Xiaojiang, Gao, Walker, Bruce, Carrington, Mary, Goulder, Philip, Heckerman, David
Publicado 2008

An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

por Lippert, Christoph, Listgarten, Jennifer, Davidson, Robert I., Baxter, Scott, Poong, Hoifung, Kadie, Carl M., Heckerman, David
Publicado 2013

CORRIGENDUM: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

por Lippert, Christoph, Listgarten, Jennifer, Davidson, Robert I., Baxter, Jeff, Poon, Hoifung, Kadie, Carl M., Heckerman, David
Publicado 2013

Further Improvements to Linear Mixed Models for Genome-Wide Association Studies

por Widmer, Christian, Lippert, Christoph, Weissbrod, Omer, Fusi, Nicolo, Kadie, Carl, Davidson, Robert, Listgarten, Jennifer, Heckerman, David
Publicado 2014

Epistatic Net allows the sparse spectral regularization of deep neural networks for inferring fitness functions

por Aghazadeh, Amirali, Nisonoff, Hunter, Ocal, Orhan, Brookes, David H., Huang, Yijie, Koyluoglu, O. Ozan, Listgarten, Jennifer, Ramchandran, Kannan
Publicado 2021

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

por Doench, John G., Fusi, Nicolo, Sullender, Meagan, Hegde, Mudra, Vaimberg, Emma W., Donovan, Katherine F., Smith, Ian, Tothova, Zuzana, Wilen, Craig, Orchard, Robert, Virgin, Herbert W., Listgarten, Jennifer, Root, David E.
Publicado 2016

Orthologous CRISPR-Cas9 enzymes for Combinatorial Genetic Screens

por Najm, Fadi J, Strand, Christine, Donovan, Katherine F, Hegde, Mudra, Sanson, Kendall R, Vaimberg, Emma W, Sullender, Meagan E, Hartenian, Ella, Kalani, Zohra, Fusi, Nicolo, Listgarten, Jennifer, Younger, Scott T, Bernstein, Bradley E, Root, David E, Doench, John G
Publicado 2017

Co-Operative Additive Effects between HLA Alleles in Control of HIV-1

por Matthews, Philippa C., Listgarten, Jennifer, Carlson, Jonathan M., Payne, Rebecca, Huang, Kuan-Hsiang Gary, Frater, John, Goedhals, Dominique, Steyn, Dewald, van Vuuren, Cloete, Paioni, Paolo, Jooste, Pieter, Ogwu, Anthony, Shapiro, Roger, Mncube, Zenele, Ndung'u, Thumbi, Walker, Bruce D., Heckerman, David, Goulder, Philip J. R.
Publicado 2012

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

por Bartha, István, Carlson, Jonathan M, Brumme, Chanson J, McLaren, Paul J, Brumme, Zabrina L, John, Mina, Haas, David W, Martinez-Picado, Javier, Dalmau, Judith, López-Galíndez, Cecilio, Casado, Concepción, Rauch, Andri, Günthard, Huldrych F, Bernasconi, Enos, Vernazza, Pietro, Klimkait, Thomas, Yerly, Sabine, O’Brien, Stephen J, Listgarten, Jennifer, Pfeifer, Nico, Lippert, Christoph, Fusi, Nicolo, Kutalik, Zoltán, Allen, Todd M, Müller, Viktor, Harrigan, P Richard, Heckerman, David, Telenti, Amalio, Fellay, Jacques
Publicado 2013