3 = 1 + 2: how the divide conquered de novo protein structure prediction and what is next?

por Zhou, Yaoqi, Litfin, Thomas, Zhan, Jian
Publicado 2023

High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydrox...

por Solayman, Md, Litfin, Thomas, Zhou, Yaoqi, Zhan, Jian
Publicado 2022

SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning

por Hanson, Jack, Paliwal, Kuldip K., Litfin, Thomas, Zhou, Yaoqi
Publicado 2019

Reaching alignment-profile-based accuracy in predicting protein secondary and tertiary structural properties without alignment

por Singh, Jaspreet, Paliwal, Kuldip, Litfin, Thomas, Singh, Jaswinder, Zhou, Yaoqi
Publicado 2022

SPOT-Contact-LM: improving single-sequence-based prediction of protein contact map using a transformer language model

por Singh, Jaspreet, Litfin, Thomas, Singh, Jaswinder, Paliwal, Kuldip, Zhou, Yaoqi
Publicado 2022

Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred secondary structure and evolutionary-derived mutational coupling

por Singh, Jaswinder, Paliwal, Kuldip, Litfin, Thomas, Singh, Jaspreet, Zhou, Yaoqi
Publicado 2022

Probing RNA structures and functions by solvent accessibility: an overview from experimental and computational perspectives

por Solayman, Md, Litfin, Thomas, Singh, Jaswinder, Paliwal, Kuldip, Zhou, Yaoqi, Zhan, Jian
Publicado 2022

Nucleotide Sugar Transporter SLC35 Family Structure and Function

por Hadley, Barbara, Litfin, Thomas, Day, Chris J., Haselhorst, Thomas, Zhou, Yaoqi, Tiralongo, Joe
Publicado 2019

Systematic Analysis of REBASE Identifies Numerous Type I Restriction-Modification Systems with Duplicated, Distinct hsdS Specificity Genes That Can Switch System Specificity by Rec...

por Atack, John M., Guo, Chengying, Litfin, Thomas, Yang, Long, Blackall, Patrick J., Zhou, Yaoqi, Jennings, Michael P.
Publicado 2020