OMiCC: An expanded and enhanced platform for meta-analysis of public gene expression data

por Liu, Candace C., Guo, Yongjian, Vrindten, Kiera L., Lau, William W., Sparks, Rachel, Tsang, John S.
Publicado 2022

Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering

por Liu, Candace C., Greenwald, Noah F., Kong, Alex, McCaffrey, Erin F., Leow, Ke Xuan, Mrdjen, Dunja, Cannon, Bryan J., Rumberger, Josef Lorenz, Varra, Sricharan Reddy, Angelo, Michael
Publicado 2023

Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis

por Ferrian, Selena, Liu, Candace C., McCaffrey, Erin F., Kumar, Rashmi, Nowicki, Theodore S., Dawson, David W., Baranski, Alex, Glaspy, John A., Ribas, Antoni, Bendall, Sean C., Angelo, Michael
Publicado 2021

Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in lupus patients

por Kotliarov, Yuri, Sparks, Rachel, Martins, Andrew J., Mulè, Matthew P., Lu, Yong, Goswami, Meghali, Kardava, Lela, Banchereau, Romain, Pascual, Virginia, Biancotto, Angelique, Chen, Jinguo, Schwartzberg, Pamela L., Bansal, Neha, Liu, Candace C., Cheung, Foo, Moir, Susan, Tsang, John S.
Publicado 2020

Spatial proteomics reveals human microglial states shaped by anatomy and neuropathology

por Mrdjen, Dunja, Amouzgar, Meelad, Cannon, Bryan, Liu, Candace, Spence, Angie, McCaffrey, Erin, Bharadwaj, Anusha, Tebaykin, Dmitry, Bukhari, Syed, Hartmann, Felix J., Kagel, Adam, Vijayaragavan, Kausalia, Oliveria, John Paul, Yakabi, Koya, Serrano, Geidy E., Corrada, Maria M., Kawas, Claudia H., Camacho, Christine, Bosse, Marc, Tibshirani, Robert, Beach, Thomas G., Angelo, Michael, Montine, Thomas, Bendall, Sean C.
Publicado 2023

Single-synapse analyses of Alzheimer’s disease implicate pathologic tau, DJ1, CD47, and ApoE

por Phongpreecha, Thanaphong, Gajera, Chandresh R., Liu, Candace C., Vijayaragavan, Kausalia, Chang, Alan L., Becker, Martin, Fallahzadeh, Ramin, Fernandez, Rosemary, Postupna, Nadia, Sherfield, Emily, Tebaykin, Dmitry, Latimer, Caitlin, Shively, Carol A., Register, Thomas C., Craft, Suzanne, Montine, Kathleen S., Fox, Edward J., Poston, Kathleen L., Keene, C. Dirk, Angelo, Michael, Bendall, Sean C., Aghaeepour, Nima, Montine, Thomas J.
Publicado 2021

Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma

por Risom, Tyler, Glass, David R., Averbukh, Inna, Liu, Candace C., Baranski, Alex, Kagel, Adam, McCaffrey, Erin F., Greenwald, Noah F., Rivero-Gutiérrez, Belén, Strand, Siri H., Varma, Sushama, Kong, Alex, Keren, Leeat, Srivastava, Sucheta, Zhu, Chunfang, Khair, Zumana, Veis, Deborah J., Deschryver, Katherine, Vennam, Sujay, Maley, Carlo, Hwang, E. Shelley, Marks, Jeffrey R., Bendall, Sean C., Colditz, Graham A., West, Robert B., Angelo, Michael
Publicado 2022

Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments

por Jiang, Sizun, Chan, Chi Ngai, Rovira-Clavé, Xavier, Chen, Han, Bai, Yunhao, Zhu, Bokai, McCaffrey, Erin, Greenwald, Noah F., Liu, Candace, Barlow, Graham L., Weirather, Jason L., Oliveria, John Paul, Nakayama, Tsuguhisa, Lee, Ivan T., Matter, Matthias S., Carlisle, Anne E., Philips, Darci, Vazquez, Gustavo, Mukherjee, Nilanjan, Busman-Sahay, Kathleen, Nekorchuk, Michael, Terry, Margaret, Younger, Skyler, Bosse, Marc, Demeter, Janos, Rodig, Scott J., Tzankov, Alexandar, Goltsev, Yury, McIlwain, David Robert, Angelo, Michael, Estes, Jacob D., Nolan, Garry P.
Publicado 2022

Multiomics integration of 22 immune-mediated monogenic diseases reveals an emergent axis of human immune health

por Sparks, Rachel, Rachmaninoff, Nicholas, Hirsch, Dylan C., Bansal, Neha, Lau, William W., Martins, Andrew J., Chen, Jinguo, Liu, Candace C., Cheung, Foo, Failla, Laura E., Biancotto, Angelique, Fantoni, Giovanna, Sellers, Brian A., Chawla, Daniel G., Howe, Katherine N., Mostaghimi, Darius, Farmer, Rohit, Kotliarov, Yuri, Calvo, Katherine R., Palmer, Cindy, Daub, Janine, Foruraghi, Ladan, Kreuzburg, Samantha, Treat, Jennifer, Urban, Amanda K., Jones, Anne, Romeo, Tina, Deuitch, Natalie T., Moura, Natalia Sampaio, Weinstein, Barbara, Moir, Susan, Ferrucci, Luigi, Barron, Karyl S., Aksentijevich, Ivona, Kleinstein, Steven H., Townsley, Danielle M., Young, Neal S., Frischmeyer-Guerrerio, Pamela A., Uzel, Gulbu, Pinto-Patarroyo, Gineth Paola, Cudrici, Cornelia D., Hoffmann, Patrycja, Stone, Deborah L., Ombrello, Amanda K., Freeman, Alexandra F., Zerbe, Christa S., Kastner, Daniel L., Holland, Steven M., Tsang, John S.
Publicado 2023

Multiomics Characterization of Preterm Birth in Low- and Middle-Income Countries

por Jehan, Fyezah, Sazawal, Sunil, Baqui, Abdullah H., Nisar, Muhammad Imran, Dhingra, Usha, Khanam, Rasheda, Ilyas, Muhammad, Dutta, Arup, Mitra, Dipak K., Mehmood, Usma, Deb, Saikat, Mahmud, Arif, Hotwani, Aneeta, Ali, Said Mohammed, Rahman, Sayedur, Nizar, Ambreen, Ame, Shaali Makame, Moin, Mamun Ibne, Muhammad, Sajid, Chauhan, Aishwarya, Begum, Nazma, Khan, Waqasuddin, Das, Sayan, Ahmed, Salahuddin, Hasan, Tarik, Khalid, Javairia, Rizvi, Syed Jafar Raza, Juma, Mohammed Hamad, Chowdhury, Nabidul Haque, Kabir, Furqan, Aftab, Fahad, Quaiyum, Abdul, Manu, Alexander, Yoshida, Sachiyo, Bahl, Rajiv, Rahman, Anisur, Pervin, Jesmin, Winston, Jennifer, Musonda, Patrick, Stringer, Jeffrey S. A., Litch, James A., Ghaemi, Mohammad Sajjad, Moufarrej, Mira N., Contrepois, Kévin, Chen, Songjie, Stelzer, Ina A., Stanley, Natalie, Chang, Alan L., Hammad, Ghaith Bany, Wong, Ronald J., Liu, Candace, Quaintance, Cecele C., Culos, Anthony, Espinosa, Camilo, Xenochristou, Maria, Becker, Martin, Fallahzadeh, Ramin, Ganio, Edward, Tsai, Amy S., Gaudilliere, Dyani, Tsai, Eileen S., Han, Xiaoyuan, Ando, Kazuo, Tingle, Martha, Marić, Ivana, Wise, Paul H., Winn, Virginia D., Druzin, Maurice L., Gibbs, Ronald S., Darmstadt, Gary L., Murray, Jeffrey C., Shaw, Gary M., Stevenson, David K., Snyder, Michael P., Quake, Stephen R., Angst, Martin S., Gaudilliere, Brice, Aghaeepour, Nima
Publicado 2020